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AT1G23460


Description : Pectin lyase-like superfamily protein


Gene families : OG0000452 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G23460

Target Alias Description ECC score Gene Family Method Actions
AT3G57510 ADPG1 Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aob_g01536 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0030.g024436 No alias EC_3.2 glycosylase & original description: CDS=1-1320 0.05 OrthoFinder output from all 47 species
Azfi_s0090.g042602 No alias EC_3.2 glycosylase & original description: CDS=1-1503 0.06 OrthoFinder output from all 47 species
GSVIVT01008061001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01017302001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01017307001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01032118001 QRT2 Cell wall.pectin.modification and... 0.02 OrthoFinder output from all 47 species
LOC_Os01g44970.1 LOC_Os01g44970 polygalacturonase (PGX1) 0.03 OrthoFinder output from all 47 species
LOC_Os05g20020.1 LOC_Os05g20020 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os08g23790.1 LOC_Os08g23790 Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.03 OrthoFinder output from all 47 species
MA_10426591g0010 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Smo102892 No alias Polygalacturonase OS=Chamaecyparis obtusa 0.02 OrthoFinder output from all 47 species
Solyc07g041650.3.1 Solyc07g041650 Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.04 OrthoFinder output from all 47 species
Zm00001e017565_P001 Zm00001e017565 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISS Interproscan
BP GO:0005975 carbohydrate metabolic process ISS Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 97 420
No external refs found!