AT1G22760 (PAB3)

Aliases : PAB3

Description : poly(A) binding protein 3

Gene families : OG0000326 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000326_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G22760

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00257980	PAB7,...	Protein biosynthesis.translation initiation.mRNA...	0.03	OrthoFinder output from all 47 species
Aspi01Gene47319.t1	PAB8, PABP8,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001264.28	PAB8, PABP8	Protein biosynthesis.translation initiation.mRNA...	0.02	OrthoFinder output from all 47 species
LOC_Os03g17030.1	PAB7, LOC_Os03g17030	mRNA poly-A-tail binding factor (PABP)	0.03	OrthoFinder output from all 47 species
Lfl_g22593	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor *(PABP) & original...	0.03	OrthoFinder output from all 47 species
Msp_g00671	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor *(PABP) & original...	0.02	OrthoFinder output from all 47 species
Zm00001e037390_P001	PAB5, Zm00001e037390	mRNA poly-A-tail binding factor (PABP)	0.07	OrthoFinder output from all 47 species
Zm00001e038469_P001	PAB7, Zm00001e038469	mRNA poly-A-tail binding factor (PABP)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0003743	translation initiation factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IGI	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009894	regulation of catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031329	regulation of cellular catabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060211	regulation of nuclear-transcribed mRNA poly(A) tail shortening	IDA	Interproscan
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061013	regulation of mRNA catabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903311	regulation of mRNA metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004396	hexokinase activity	IEP	HCCA
MF	GO:0005337	nucleoside transmembrane transporter activity	IEP	HCCA
MF	GO:0005372	water transmembrane transporter activity	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
BP	GO:0010208	pollen wall assembly	IEP	HCCA
BP	GO:0010584	pollen exine formation	IEP	HCCA
BP	GO:0010927	cellular component assembly involved in morphogenesis	IEP	HCCA
MF	GO:0015250	water channel activity	IEP	HCCA
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	HCCA
CC	GO:0016459	myosin complex	IEP	HCCA
MF	GO:0019200	carbohydrate kinase activity	IEP	HCCA
BP	GO:0030036	actin cytoskeleton organization	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	HCCA
BP	GO:0051645	Golgi localization	IEP	HCCA
BP	GO:0051646	mitochondrion localization	IEP	HCCA
BP	GO:0060151	peroxisome localization	IEP	HCCA
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002004	PABP_HYD	577	643
IPR000504	RRM_dom	334	402
IPR000504	RRM_dom	51	120
IPR000504	RRM_dom	138	205
IPR000504	RRM_dom	231	299

External Links

No external refs found!

AT1G22760 (PAB3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation