AT1G21700 (CHB4, SWI3C, ATSWI3C)

Aliases : CHB4, SWI3C, ATSWI3C

Description : SWITCH/sucrose nonfermenting 3C

Gene families : OG0000817 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000817_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G21700
Cluster	HCCA: Cluster_18

Target	Alias	Description	ECC score	Gene Family Method
Adi_g014216	CHB3, ATSWI3D	SMARCC component *(SWI3) of chromatin remodeling complex...	0.02	OrthoFinder output from all 47 species
Ala_g02056	SWI3A, CHB1, ATSWI3A	SMARCC component *(SWI3) of chromatin remodeling complex...	0.03	OrthoFinder output from all 47 species
Ala_g13215	SWI3A, CHB1, ATSWI3A	SMARCC component *(SWI3) of chromatin remodeling complex...	0.03	OrthoFinder output from all 47 species
Als_g09005	CHB4, SWI3C, ATSWI3C	SMARCC component *(SWI3) of chromatin remodeling complex...	0.03	OrthoFinder output from all 47 species
Als_g19082	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g08555	CHB4, SWI3C, ATSWI3C	SMARCC component *(SWI3) of chromatin remodeling complex...	0.03	OrthoFinder output from all 47 species
Aspi01Gene17691.t1	Aspi01Gene17691	SMARCC component *(SWI3) of chromatin remodeling complex...	0.02	OrthoFinder output from all 47 species
Cba_g14378	CHB4, SWI3C, ATSWI3C	SMARCC component *(SWI3) of chromatin remodeling complex...	0.03	OrthoFinder output from all 47 species
Ceric.03G090000.1	CHB4, SWI3C,...	SMARCC component *(SWI3) of chromatin remodeling complex...	0.04	OrthoFinder output from all 47 species
Ceric.22G071000.1	CHB3, ATSWI3D,...	SMARCC component *(SWI3) of chromatin remodeling complex...	0.03	OrthoFinder output from all 47 species
Ceric.28G011200.1	CHB2, SWI3B,...	SMARCC component *(SWI3) of chromatin remodeling complex...	0.05	OrthoFinder output from all 47 species
Dac_g11402	CHB4, SWI3C, ATSWI3C	SMARCC component *(SWI3) of chromatin remodeling complex...	0.04	OrthoFinder output from all 47 species
Dac_g29366	SWI3A, CHB1, ATSWI3A	SMARCC component *(SWI3) of chromatin remodeling complex...	0.02	OrthoFinder output from all 47 species
Dcu_g03107	CHB3, ATSWI3D	SMARCC component *(SWI3) of chromatin remodeling complex...	0.03	OrthoFinder output from all 47 species
Dcu_g15056	SWI3A, CHB1, ATSWI3A	SMARCC component *(SWI3) of chromatin remodeling complex...	0.02	OrthoFinder output from all 47 species
GSVIVT01008831001	CHB4, SWI3C, ATSWI3C	Chromatin organisation.chromatin remodeling...	0.04	OrthoFinder output from all 47 species
GSVIVT01031951001	CHB3, ATSWI3D	Chromatin organisation.chromatin remodeling...	0.05	OrthoFinder output from all 47 species
Gb_22023	CHB2, SWI3B, ATSWI3B	component BAF255/170 of chromatin remodeling complex	0.03	OrthoFinder output from all 47 species
LOC_Os02g10060.1	CHB2, SWI3B,...	component BAF255/170 of chromatin remodeling complex	0.03	OrthoFinder output from all 47 species
LOC_Os11g08080.1	CHB4, SWI3C,...	component BAF255/170 of chromatin remodeling complex	0.03	OrthoFinder output from all 47 species
LOC_Os12g07730.1	CHB4, SWI3C,...	component BAF255/170 of chromatin remodeling complex	0.04	OrthoFinder output from all 47 species
Lfl_g08793	CHB4, SWI3C, ATSWI3C	SMARCC component *(SWI3) of chromatin remodeling complex...	0.03	OrthoFinder output from all 47 species
MA_10432371g0020	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Msp_g26887	SWI3A, CHB1, ATSWI3A	SMARCC component *(SWI3) of chromatin remodeling complex...	0.03	OrthoFinder output from all 47 species
Nbi_g10605	CHB3, ATSWI3D	SMARCC component *(SWI3) of chromatin remodeling complex...	0.03	OrthoFinder output from all 47 species
Pnu_g27615	CHB4, SWI3C, ATSWI3C	SMARCC component *(SWI3) of chromatin remodeling complex...	0.03	OrthoFinder output from all 47 species
Ppi_g01335	CHB3, ATSWI3D	SMARCC component *(SWI3) of chromatin remodeling complex...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0127.g021843	CHB4, SWI3C, ATSWI3C	SMARCC component *(SWI3) of chromatin remodeling complex...	0.03	OrthoFinder output from all 47 species
Sam_g07213	No alias	SMARCC component *(SWI3) of chromatin remodeling complex...	0.03	OrthoFinder output from all 47 species
Sam_g52721	No alias	SMARCC component *(SWI3) of chromatin remodeling complex...	0.02	OrthoFinder output from all 47 species
Solyc01g109510.3.1	CHB3, ATSWI3D,...	component BAF255/170 of chromatin remodeling complex	0.03	OrthoFinder output from all 47 species
Spa_g06724	SWI3A, CHB1, ATSWI3A	SMARCC component *(SWI3) of chromatin remodeling complex...	0.03	OrthoFinder output from all 47 species
Spa_g30642	CHB3, ATSWI3D	SMARCC component *(SWI3) of chromatin remodeling complex...	0.03	OrthoFinder output from all 47 species
Tin_g26033	SWI3A, CHB1, ATSWI3A	SMARCC component *(SWI3) of chromaTin remodeling complex...	0.03	OrthoFinder output from all 47 species
Zm00001e007799_P001	SWI3A, CHB1,...	component BAF255/170 of chromatin remodeling complex	0.04	OrthoFinder output from all 47 species
Zm00001e018409_P001	CHB4, SWI3C,...	component BAF255/170 of chromatin remodeling complex	0.04	OrthoFinder output from all 47 species
Zm00001e024548_P001	CHB4, SWI3C,...	component BAF255/170 of chromatin remodeling complex	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	ISS	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007059	chromosome segregation	None	Extended
BP	GO:0007062	sister chromatid cohesion	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
CC	GO:0016514	SWI/SNF complex	ISS	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031047	RNA-mediated gene silencing	None	Extended
BP	GO:0031048	RNA-mediated heterochromatin formation	RCA	Interproscan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031507	heterochromatin formation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0040029	epigenetic regulation of gene expression	RCA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045132	meiotic chromosome segregation	RCA	Interproscan
BP	GO:0045814	negative regulation of gene expression, epigenetic	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070603	SWI/SNF superfamily-type complex	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098813	nuclear chromosome segregation	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
CC	GO:1904949	ATPase complex	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
BP	GO:0000723	telomere maintenance	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006312	mitotic recombination	IEP	HCCA
BP	GO:0006354	DNA-templated transcription elongation	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0007129	homologous chromosome pairing at meiosis	IEP	HCCA
BP	GO:0007346	regulation of mitotic cell cycle	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0010212	response to ionizing radiation	IEP	HCCA
BP	GO:0010267	ta-siRNA processing	IEP	HCCA
BP	GO:0010332	response to gamma radiation	IEP	HCCA
CC	GO:0010445	nuclear dicing body	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
CC	GO:0016604	nuclear body	IEP	HCCA
CC	GO:0016607	nuclear speck	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
BP	GO:0031053	primary miRNA processing	IEP	HCCA
BP	GO:0032200	telomere organization	IEP	HCCA
BP	GO:0032204	regulation of telomere maintenance	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0042138	meiotic DNA double-strand break formation	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043247	telomere maintenance in response to DNA damage	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043687	post-translational protein modification	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0048509	regulation of meristem development	IEP	HCCA
BP	GO:0051726	regulation of cell cycle	IEP	HCCA
BP	GO:0061982	meiosis I cell cycle process	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:2000011	regulation of adaxial/abaxial pattern formation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR032451	SMARCC_C	585	658
IPR001005	SANT/Myb	402	444
IPR007526	SWIRM	180	265

External Links

No external refs found!

AT1G21700 (CHB4, SWI3C, ATSWI3C)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation