1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT1G21580

AT1G21580


Description : Zinc finger C-x8-C-x5-C-x3-H type family protein


Gene families : OG0004256 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004256_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G21580

Target Alias Description ECC score Gene Family Method Actions
Ala_g33279 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.05 OrthoFinder output from all 47 species
Aob_g26394 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.04 OrthoFinder output from all 47 species
Ceric.23G086900.1 Ceric.23G086900 component *(SOP1) of PAXT RNA-exosome-activation complex... 0.05 OrthoFinder output from all 47 species
Dac_g22545 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.04 OrthoFinder output from all 47 species
Dcu_g09581 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.03 OrthoFinder output from all 47 species
GSVIVT01008802001 No alias RNA processing.RNA decay.exosome complex.associated... 0.06 OrthoFinder output from all 47 species
LOC_Os06g43120.1 LOC_Os06g43120 RNA degradation surveillance factor (SOP1) 0.08 OrthoFinder output from all 47 species
Len_g41224 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.04 OrthoFinder output from all 47 species
Lfl_g16590 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.06 OrthoFinder output from all 47 species
MA_140138g0020 No alias RNA degradation surveillance factor (SOP1) 0.04 OrthoFinder output from all 47 species
Ore_g44276 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.04 OrthoFinder output from all 47 species
Pir_g44148 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0148.g023212 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.03 OrthoFinder output from all 47 species
Solyc04g057990.4.1 Solyc04g057990 RNA degradation surveillance factor (SOP1) 0.09 OrthoFinder output from all 47 species
Spa_g22203 No alias component *(SOP1) of PAXT RNA-exosome-activation complex... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
BP GO:0000303 response to superoxide IEP HCCA
BP GO:0000305 response to oxygen radical IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
MF GO:0004683 calmodulin-dependent protein kinase activity IEP HCCA
MF GO:0004888 transmembrane signaling receptor activity IEP HCCA
MF GO:0005034 osmosensor activity IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006498 N-terminal protein lipidation IEP HCCA
BP GO:0006499 N-terminal protein myristoylation IEP HCCA
BP GO:0006625 protein targeting to peroxisome IEP HCCA
BP GO:0006635 fatty acid beta-oxidation IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0007031 peroxisome organization IEP HCCA
BP GO:0007623 circadian rhythm IEP HCCA
BP GO:0008219 cell death IEP HCCA
BP GO:0009736 cytokinin-activated signaling pathway IEP HCCA
BP GO:0009873 ethylene-activated signaling pathway IEP HCCA
MF GO:0009884 cytokinin receptor activity IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0010029 regulation of seed germination IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0010087 phloem or xylem histogenesis IEP HCCA
BP GO:0010150 leaf senescence IEP HCCA
BP GO:0010271 regulation of chlorophyll catabolic process IEP HCCA
BP GO:0010959 regulation of metal ion transport IEP HCCA
BP GO:0015919 peroxisomal membrane transport IEP HCCA
BP GO:0016036 cellular response to phosphate starvation IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016558 protein import into peroxisome matrix IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
BP GO:0018377 protein myristoylation IEP HCCA
BP GO:0019395 fatty acid oxidation IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019900 kinase binding IEP HCCA
MF GO:0019901 protein kinase binding IEP HCCA
MF GO:0019902 phosphatase binding IEP HCCA
MF GO:0019903 protein phosphatase binding IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
BP GO:0031329 regulation of cellular catabolic process IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
BP GO:0031537 regulation of anthocyanin metabolic process IEP HCCA
BP GO:0032870 cellular response to hormone stimulus IEP HCCA
BP GO:0034440 lipid oxidation IEP HCCA
BP GO:0034756 regulation of iron ion transport IEP HCCA
BP GO:0034757 negative regulation of iron ion transport IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0038023 signaling receptor activity IEP HCCA
BP GO:0043269 regulation of monoatomic ion transport IEP HCCA
BP GO:0043271 negative regulation of monoatomic ion transport IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
MF GO:0043424 protein histidine kinase binding IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0043574 peroxisomal transport IEP HCCA
BP GO:0044743 protein transmembrane import into intracellular organelle IEP HCCA
BP GO:0048509 regulation of meristem development IEP HCCA
BP GO:0048511 rhythmic process IEP HCCA
BP GO:0051049 regulation of transport IEP HCCA
BP GO:0051051 negative regulation of transport IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
BP GO:0065002 intracellular protein transmembrane transport IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070417 cellular response to cold IEP HCCA
BP GO:0071215 cellular response to abscisic acid stimulus IEP HCCA
BP GO:0071310 cellular response to organic substance IEP HCCA
BP GO:0071322 cellular response to carbohydrate stimulus IEP HCCA
BP GO:0071324 cellular response to disaccharide stimulus IEP HCCA
BP GO:0071329 cellular response to sucrose stimulus IEP HCCA
BP GO:0071396 cellular response to lipid IEP HCCA
BP GO:0071495 cellular response to endogenous stimulus IEP HCCA
BP GO:0071806 protein transmembrane transport IEP HCCA
BP GO:0072662 protein localization to peroxisome IEP HCCA
BP GO:0072663 establishment of protein localization to peroxisome IEP HCCA
BP GO:0080117 secondary growth IEP HCCA
BP GO:0080190 lateral growth IEP HCCA
BP GO:0090056 regulation of chlorophyll metabolic process IEP HCCA
BP GO:0090693 plant organ senescence IEP HCCA
BP GO:0097306 cellular response to alcohol IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
BP GO:1900140 regulation of seedling development IEP HCCA
BP GO:1901401 regulation of tetrapyrrole metabolic process IEP HCCA
BP GO:1901404 regulation of tetrapyrrole catabolic process IEP HCCA
BP GO:1901701 cellular response to oxygen-containing compound IEP HCCA

No InterPro domains available for this sequence

No external refs found!