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  5. AT1G21190

AT1G21190


Description : Small nuclear ribonucleoprotein family protein


Gene families : OG0008069 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008069_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G21190

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00090360 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species
Azfi_s0263.g060870 No alias component *(LSm3) of U6-associated LSm accessory... 0.04 OrthoFinder output from all 47 species
Ceric.14G087800.1 Ceric.14G087800 component *(LSm3) of U6-associated LSm accessory... 0.04 OrthoFinder output from all 47 species
Cre16.g662300 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.05 OrthoFinder output from all 47 species
Gb_30400 No alias component LSm3 of U6-associated LSm accessory... 0.04 OrthoFinder output from all 47 species
LOC_Os01g64690.1 LOC_Os01g64690 component LSm3 of U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species
Mp8g11310.1 No alias component LSm3 of U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014425 No alias component *(LSm3) of U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species
Smo107803 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex ISS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000785 chromatin IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004871 obsolete signal transducer activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0005513 detection of calcium ion IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0009593 detection of chemical stimulus IEP HCCA
BP GO:0009612 response to mechanical stimulus IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0010038 response to metal ion IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019722 calcium-mediated signaling IEP HCCA
BP GO:0019932 second-messenger-mediated signaling IEP HCCA
BP GO:0030029 actin filament-based process IEP HCCA
BP GO:0030048 actin filament-based movement IEP HCCA
MF GO:0030527 structural constituent of chromatin IEP HCCA
BP GO:0030865 cortical cytoskeleton organization IEP HCCA
BP GO:0031122 cytoplasmic microtubule organization IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0043622 cortical microtubule organization IEP HCCA
BP GO:0051592 response to calcium ion IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051645 Golgi localization IEP HCCA
BP GO:0051646 mitochondrion localization IEP HCCA
BP GO:0060151 peroxisome localization IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 16 92
No external refs found!