AT1G20696 (NFD03, HMGB3, NFD3)

Aliases : NFD03, HMGB3, NFD3

Description : high mobility group B3

Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G20696

Target	Alias	Description	ECC score	Gene Family Method
Als_g36476	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene48018.t1	NFD4, HMGB4,...	DNA bending architectural protein *(HMG-B) & original...	0.03	OrthoFinder output from all 47 species
Ceric.03G049000.1	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.03	OrthoFinder output from all 47 species
Cre06.g261450	ATHMG, HMG, SSRP1, NFD	No description available	0.06	OrthoFinder output from all 47 species
Dde_g02569	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.04	OrthoFinder output from all 47 species
Ehy_g13287	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.02	OrthoFinder output from all 47 species
Ehy_g21071	NFD03, HMGB3, NFD3	DNA bending architectural protein *(HMG-B) & original...	0.05	OrthoFinder output from all 47 species
GSVIVT01021424001	No alias	High mobility group B protein 14 OS=Arabidopsis thaliana	0.05	OrthoFinder output from all 47 species
GSVIVT01032839001	No alias	No description available	0.04	OrthoFinder output from all 47 species
Gb_23297	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
LOC_Os08g01100.1	HMGB6, LOC_Os08g01100	High mobility group B protein 7 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Lfl_g21733	NFD2, HMG BETA...	DNA bending architectural protein *(HMG-B) & original...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014473	HMGB6	DNA bending architectural protein *(HMG-B) & original...	0.02	OrthoFinder output from all 47 species
Sam_g13942	No alias	DNA bending architectural protein *(HMG-B) & original...	0.03	OrthoFinder output from all 47 species
Sam_g13956	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000785	chromatin	TAS	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IDA	Interproscan
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003682	chromatin binding	TAS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005996	monosaccharide metabolic process	None	Extended
BP	GO:0006006	glucose metabolic process	None	Extended
BP	GO:0006007	glucose catabolic process	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0016052	carbohydrate catabolic process	None	Extended
BP	GO:0019318	hexose metabolic process	None	Extended
BP	GO:0019320	hexose catabolic process	None	Extended
MF	GO:0030527	structural constituent of chromatin	TAS	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0046365	monosaccharide catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	HCCA
BP	GO:0006833	water transport	IEP	HCCA
BP	GO:0015711	organic anion transport	IEP	HCCA
BP	GO:0015804	neutral amino acid transport	IEP	HCCA
BP	GO:0015824	proline transport	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
MF	GO:0035064	methylated histone binding	IEP	HCCA
BP	GO:0042044	fluid transport	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	HCCA
BP	GO:0046942	carboxylic acid transport	IEP	HCCA
MF	GO:0140030	modification-dependent protein binding	IEP	HCCA
MF	GO:0140034	methylation-dependent protein binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR009071	HMG_box_dom	35	104

External Links

No external refs found!

AT1G20696 (NFD03, HMGB3, NFD3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation