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  5. AT1G19170

AT1G19170


Description : Pectin lyase-like superfamily protein


Gene families : OG0000312 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000312_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G19170
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00258260 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.02 OrthoFinder output from all 47 species
AMTR_s00003p00141260 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 OrthoFinder output from all 47 species
AMTR_s00045p00118570 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.02 OrthoFinder output from all 47 species
AT2G23900 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G06770 No alias Pectin lyase-like superfamily protein 0.08 OrthoFinder output from all 47 species
AT3G16850 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G23820 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g110576 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g32626 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g43887 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g07714 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g18890 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11539 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20477 No alias EC_3.2 glycosylase & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g11182 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene04011.t1 Aspi01Gene04011 EC_3.2 glycosylase & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene20891.t1 Aspi01Gene20891 EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene23222.t1 Aspi01Gene23222 EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene69423.t1 Aspi01Gene69423 EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g12302 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16676 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g24405 No alias EC_3.2 glycosylase & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.09G023500.1 Ceric.09G023500 EC_3.2 glycosylase & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g02823 No alias EC_3.2 glycosylase & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g06837 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05528 No alias EC_3.2 glycosylase & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g29621 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g12348 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22323 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04582 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05796 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g08388 No alias EC_3.2 glycosylase & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g09567 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g10127 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g10515 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g14122 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15261 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01015044001 No alias Probable polygalacturonase OS=Vitis vinifera 0.16 OrthoFinder output from all 47 species
GSVIVT01019405001 No alias Probable polygalacturonase OS=Vitis vinifera 0.05 OrthoFinder output from all 47 species
GSVIVT01019516001 No alias Probable polygalacturonase OS=Vitis vinifera 0.03 OrthoFinder output from all 47 species
GSVIVT01026985001 No alias Probable polygalacturonase OS=Vitis vinifera 0.03 OrthoFinder output from all 47 species
GSVIVT01028246001 No alias Probable polygalacturonase OS=Vitis vinifera 0.04 OrthoFinder output from all 47 species
GSVIVT01028860001 No alias Probable polygalacturonase OS=Vitis vinifera 0.04 OrthoFinder output from all 47 species
GSVIVT01028861001 No alias Probable polygalacturonase OS=Vitis vinifera 0.02 OrthoFinder output from all 47 species
Gb_06212 No alias Probable polygalacturonase OS=Vitis vinifera... 0.04 OrthoFinder output from all 47 species
Gb_23151 No alias Probable polygalacturonase OS=Vitis vinifera... 0.06 OrthoFinder output from all 47 species
Gb_23153 No alias Probable polygalacturonase OS=Vitis vinifera... 0.06 OrthoFinder output from all 47 species
Gb_39001 No alias Probable polygalacturonase OS=Vitis vinifera... 0.06 OrthoFinder output from all 47 species
LOC_Os01g43160.1 LOC_Os01g43160 Probable polygalacturonase OS=Vitis vinifera... 0.04 OrthoFinder output from all 47 species
LOC_Os02g15690.1 LOC_Os02g15690 Probable polygalacturonase OS=Vitis vinifera... 0.05 OrthoFinder output from all 47 species
LOC_Os02g54030.1 LOC_Os02g54030 Probable polygalacturonase OS=Vitis vinifera... 0.09 OrthoFinder output from all 47 species
LOC_Os03g03350.1 LOC_Os03g03350 Probable polygalacturonase OS=Vitis vinifera... 0.03 OrthoFinder output from all 47 species
LOC_Os05g50960.1 LOC_Os05g50960 Probable polygalacturonase OS=Vitis vinifera... 0.1 OrthoFinder output from all 47 species
LOC_Os07g14160.1 LOC_Os07g14160 Probable polygalacturonase OS=Vitis vinifera... 0.01 OrthoFinder output from all 47 species
LOC_Os11g43750.1 LOC_Os11g43750 Probable polygalacturonase OS=Vitis vinifera... 0.05 OrthoFinder output from all 47 species
LOC_Os12g36810.1 LOC_Os12g36810 Probable polygalacturonase OS=Vitis vinifera... 0.04 OrthoFinder output from all 47 species
Len_g07468 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g38310 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
MA_10430135g0020 No alias Probable polygalacturonase OS=Vitis vinifera... 0.08 OrthoFinder output from all 47 species
MA_11025g0010 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 OrthoFinder output from all 47 species
MA_88519g0010 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 OrthoFinder output from all 47 species
Msp_g06926 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g08216 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g31187 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g15019 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g40127 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43420 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g43812 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10961 No alias EC_3.2 glycosylase & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g18141 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61919 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014802 No alias EC_3.2 glycosylase & original description: CDS=243-1718 0.02 OrthoFinder output from all 47 species
Smo78556 No alias Probable polygalacturonase OS=Vitis vinifera 0.02 OrthoFinder output from all 47 species
Solyc06g009790.4.1 Solyc06g009790 Probable polygalacturonase OS=Vitis vinifera... 0.03 OrthoFinder output from all 47 species
Solyc07g042160.3.1 Solyc07g042160 Probable polygalacturonase OS=Vitis vinifera... 0.06 OrthoFinder output from all 47 species
Solyc08g081480.3.1 Solyc08g081480 Probable polygalacturonase OS=Vitis vinifera... 0.04 OrthoFinder output from all 47 species
Solyc09g075460.3.1 Solyc09g075460 Probable polygalacturonase OS=Vitis vinifera... 0.03 OrthoFinder output from all 47 species
Spa_g06310 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g14594 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g26618 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g39269 No alias EC_3.2 glycosylase & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g51753 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11741 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g24209 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006249_P001 Zm00001e006249 Probable polygalacturonase OS=Vitis vinifera... 0.04 OrthoFinder output from all 47 species
Zm00001e023760_P001 Zm00001e023760 Probable polygalacturonase OS=Vitis vinifera... 0.19 OrthoFinder output from all 47 species
Zm00001e026646_P002 Zm00001e026646 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Zm00001e034257_P001 Zm00001e034257 Probable polygalacturonase OS=Vitis vinifera... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISS Interproscan
BP GO:0005975 carbohydrate metabolic process ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0003002 regionalization IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0004565 beta-galactosidase activity IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0007155 cell adhesion IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009799 specification of symmetry IEP HCCA
BP GO:0009832 plant-type cell wall biogenesis IEP HCCA
BP GO:0009834 plant-type secondary cell wall biogenesis IEP HCCA
BP GO:0009855 determination of bilateral symmetry IEP HCCA
BP GO:0009887 animal organ morphogenesis IEP HCCA
BP GO:0010014 meristem initiation IEP HCCA
BP GO:0010016 shoot system morphogenesis IEP HCCA
BP GO:0010051 xylem and phloem pattern formation IEP HCCA
BP GO:0010073 meristem maintenance IEP HCCA
BP GO:0010383 cell wall polysaccharide metabolic process IEP HCCA
BP GO:0010410 hemicellulose metabolic process IEP HCCA
BP GO:0010413 glucuronoxylan metabolic process IEP HCCA
MF GO:0015925 galactosidase activity IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016926 protein desumoylation IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0042546 cell wall biogenesis IEP HCCA
BP GO:0042743 hydrogen peroxide metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044038 cell wall macromolecule biosynthetic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0045491 xylan metabolic process IEP HCCA
BP GO:0045492 xylan biosynthetic process IEP HCCA
BP GO:0046777 protein autophosphorylation IEP HCCA
BP GO:0048439 flower morphogenesis IEP HCCA
BP GO:0050665 hydrogen peroxide biosynthetic process IEP HCCA
BP GO:0070589 cellular component macromolecule biosynthetic process IEP HCCA
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:1903409 reactive oxygen species biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 184 466
No external refs found!