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AT1G17980 (PAPS1)


Aliases : PAPS1

Description : poly(A) polymerase 1


Gene families : OG0000731 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000731_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G17980
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
Adi_g055927 PAPS1 poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene26471.t1 PAPS2, Aspi01Gene26471 poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene26473.t1 PAPS2, Aspi01Gene26473 poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene26481.t1 PAPS2, Aspi01Gene26481 poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene26482.t1 PAPS2, Aspi01Gene26482 poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g19920.1 PAPS3, LOC_Os03g19920 poly(A) RNA polymerase 0.04 OrthoFinder output from all 47 species
Ppi_g08262 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle RCA Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006396 RNA processing RCA Interproscan
MF GO:0016779 nucleotidyltransferase activity ISS Interproscan
BP GO:0043631 RNA polyadenylation IDA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001666 response to hypoxia IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006950 response to stress IEP HCCA
CC GO:0009505 plant-type cell wall IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009612 response to mechanical stimulus IEP HCCA
BP GO:0009620 response to fungus IEP HCCA
BP GO:0010200 response to chitin IEP HCCA
BP GO:0010243 response to organonitrogen compound IEP HCCA
BP GO:0036293 response to decreased oxygen levels IEP HCCA
BP GO:0046777 protein autophosphorylation IEP HCCA
BP GO:0050832 defense response to fungus IEP HCCA
BP GO:0070482 response to oxygen levels IEP HCCA
InterPro domains Description Start Stop
IPR007010 PolA_pol_RNA-bd_dom 359 417
IPR007012 PolA_pol_cen_dom 12 356
IPR002934 Polymerase_NTP_transf_dom 82 145
No external refs found!