AT1G16610 (RNPS1, SR45)

Aliases : RNPS1, SR45

Description : arginine/serine-rich 45

Gene families : OG0002814 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002814_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G16610

Target	Alias	Description	ECC score	Gene Family Method
Adi_g113272	RNPS1, SR45	component *(RNPS1) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Ceric.19G041100.1	RNPS1, SR45,...	component *(RNPS1) of RNA quality control Exon Junction...	0.04	OrthoFinder output from all 47 species
Mp4g11580.1	RNPS1, SR45	component RNPS1 of RNA quality control Exon Junction complex	0.02	OrthoFinder output from all 47 species
Pir_g22284	No alias	component *(RNPS1) of RNA quality control Exon Junction...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0099.g019602	RNPS1, SR45	not classified & original description: CDS=110-1036	0.03	OrthoFinder output from all 47 species
Solyc10g005590.4.1	RNPS1, SR45,...	component RNPS1 of RNA quality control Exon Junction complex	0.07	OrthoFinder output from all 47 species
Zm00001e018566_P001	RNPS1, SR45,...	component RNPS1 of RNA quality control Exon Junction complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	IPI	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IDA	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	NAS	Interproscan
BP	GO:0009756	carbohydrate mediated signaling	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010182	sugar mediated signaling pathway	IMP	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
CC	GO:0016604	nuclear body	None	Extended
CC	GO:0016607	nuclear speck	IDA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005634	nucleus	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	102	170

External Links

No external refs found!

AT1G16610 (RNPS1, SR45)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation