AT1G16280 (AtRH36, SWA3, RH36)

Aliases : AtRH36, SWA3, RH36

Description : RNA helicase 36

Gene families : OG0001703 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001703_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G16280

Target	Alias	Description	ECC score	Gene Family Method
Als_g08732	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g01587	AtRH36, SWA3, RH36	SSU processome assembly factor *(SWA3) & original...	0.03	OrthoFinder output from all 47 species
Aob_g01607	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g20576	AtRH36, SWA3, RH36	SSU processome assembly factor *(SWA3) & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0073.g037272	No alias	not classified & original description: CDS=107-1516	0.03	OrthoFinder output from all 47 species
Cba_g10042	AtRH36, SWA3, RH36	SSU processome assembly factor *(SWA3) & original...	0.02	OrthoFinder output from all 47 species
Ceric.06G021600.1	Ceric.06G021600	not classified & original description: pacid=50619132...	0.03	OrthoFinder output from all 47 species
Ceric.17G072400.1	AtRH36, SWA3,...	SSU processome assembly factor *(SWA3) & original...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020848.20	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Cre12.g505200	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa...	0.07	OrthoFinder output from all 47 species
Dac_g04191	AtRH36, SWA3, RH36	SSU processome assembly factor *(SWA3) & original...	0.03	OrthoFinder output from all 47 species
Gb_23737	AtRH36, SWA3, RH36	SSU processome assembly factor (SWA3)	0.03	OrthoFinder output from all 47 species
LOC_Os03g46610.1	LOC_Os03g46610	DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa...	0.05	OrthoFinder output from all 47 species
LOC_Os07g43980.1	AtRH36, SWA3,...	SSU processome assembly factor (SWA3)	0.06	OrthoFinder output from all 47 species
Lfl_g02957	AtRH36, SWA3, RH36	SSU processome assembly factor *(SWA3) & original...	0.02	OrthoFinder output from all 47 species
Mp1g19410.1	AtRH36, SWA3, RH36	SSU processome assembly factor (SWA3)	0.08	OrthoFinder output from all 47 species
Mp4g20180.1	No alias	DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis...	0.12	OrthoFinder output from all 47 species
Solyc10g005520.3.1	AtRH36, SWA3,...	SSU processome assembly factor (SWA3)	0.05	OrthoFinder output from all 47 species
Solyc10g007550.3.1	Solyc10g007550	DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis...	0.08	OrthoFinder output from all 47 species
Spa_g06006	AtRH36, SWA3, RH36	SSU processome assembly factor *(SWA3) & original...	0.03	OrthoFinder output from all 47 species
Spa_g11648	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e013281_P004	Zm00001e013281	DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa...	0.1	OrthoFinder output from all 47 species
Zm00001e035639_P002	AtRH36, SWA3,...	SSU processome assembly factor (SWA3)	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IMP	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006606	protein import into nucleus	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009553	embryo sac development	IMP	Interproscan
BP	GO:0009561	megagametogenesis	IMP	Interproscan
BP	GO:0009791	post-embryonic development	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034504	protein localization to nucleus	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
CC	GO:0042995	cell projection	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051170	import into nucleus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0090406	pollen tube	IDA	Interproscan
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0120025	plasma membrane bounded cell projection	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	82	250
IPR001650	Helicase_C	290	397

External Links

No external refs found!

AT1G16280 (AtRH36, SWA3, RH36)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation