AT1G13160

Description : ARM repeat superfamily protein

Gene families : OG0004660 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004660_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G13160

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00049p00137690	evm_27.TU.AmTr_v1...	No description available	0.03	OrthoFinder output from all 47 species
Adi_g053627	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g22171	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g26211	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.37G033500.1	Ceric.37G033500	not classified & original description: pacid=50616272...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000545.36	No alias	No description available	0.03	OrthoFinder output from all 47 species
Cre06.g277050	No alias	No description available	0.06	OrthoFinder output from all 47 species
Dcu_g12020	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01000585001	No alias	No description available	0.04	OrthoFinder output from all 47 species
LOC_Os04g53770.1	LOC_Os04g53770	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_29597g0020	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Pir_g16584	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo113277	No alias	No description available	0.03	OrthoFinder output from all 47 species
Solyc12g099890.2.1	Solyc12g099890	no hits & (original description: none)	0.07	OrthoFinder output from all 47 species
Zm00001e006853_P001	Zm00001e006853	no hits & (original description: none)	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006405	RNA export from nucleus	None	Extended
BP	GO:0006406	mRNA export from nucleus	RCA	Interproscan
BP	GO:0006606	protein import into nucleus	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015931	nucleobase-containing compound transport	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034504	protein localization to nucleus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0050657	nucleic acid transport	None	Extended
BP	GO:0050658	RNA transport	None	Extended
BP	GO:0051028	mRNA transport	None	Extended
BP	GO:0051168	nuclear export	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051170	import into nucleus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051236	establishment of RNA localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000741	karyogamy	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005739	mitochondrion	IEP	HCCA
CC	GO:0005741	mitochondrial outer membrane	IEP	HCCA
CC	GO:0005743	mitochondrial inner membrane	IEP	HCCA
BP	GO:0006312	mitotic recombination	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006446	regulation of translational initiation	IEP	HCCA
BP	GO:0006997	nucleus organization	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0008408	3'-5' exonuclease activity	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009553	embryo sac development	IEP	HCCA
BP	GO:0009560	embryo sac egg cell differentiation	IEP	HCCA
BP	GO:0009561	megagametogenesis	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0030154	cell differentiation	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0048284	organelle fusion	IEP	HCCA
BP	GO:0048869	cellular developmental process	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007949	SDA1_C	449	801
IPR012977	SDA1_N	86	135

External Links

No external refs found!

AT1G13160

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation