AT1G12630

Description : Integrase-type DNA-binding superfamily protein

Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G12630

Target	Alias	Description	ECC score	Gene Family Method
AT4G31060	No alias	Integrase-type DNA-binding superfamily protein	0.04	OrthoFinder output from all 47 species
AT5G18560	PUCHI	Integrase-type DNA-binding superfamily protein	0.05	OrthoFinder output from all 47 species
Adi_g039127	ATERF-9, ERF9, ATERF9	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g045252	ATERF12, ERF12	subgroup ERF-VIII transcription factor & original...	0.06	OrthoFinder output from all 47 species
Adi_g067400	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g074528	ERF-1, ATERF-1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g084219	ATERF3, ERF3	subgroup ERF-VIII transcription factor & original...	0.04	OrthoFinder output from all 47 species
Adi_g111965	ATERF3, ERF3	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aev_g07933	RAP2.2	transcription factor component *(HRE/RAP2.12) of...	0.02	OrthoFinder output from all 47 species
Ala_g25693	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g48728	RAP2.12	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Aop_g36430	No alias	subgroup ERF-III transcription factor & original...	0.02	OrthoFinder output from all 47 species
Cba_g57026	RAP2.11	transcription factor *(ERN1) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.05G076100.1	ATERF12, ERF12,...	subgroup ERF-VIII transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ceric.10G005400.1	RAP2.12, Ceric.10G005400	transcription factor component *(HRE/RAP2.12) of...	0.03	OrthoFinder output from all 47 species
Ceric.10G012300.1	TINY2, Ceric.10G012300	subgroup ERF-III transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ceric.11G046500.1	Ceric.11G046500	subgroup ERF-V transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.13G053900.1	Ceric.13G053900	subgroup ERF-IX transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ceric.13G080300.1	Ceric.13G080300	subgroup ERF-V transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ceric.29G058100.1	DREB2A, DREB2,...	subgroup ERF-IV/DREB2 transcription factor & original...	0.04	OrthoFinder output from all 47 species
GSVIVT01006277001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.05	OrthoFinder output from all 47 species
Gb_08031	tny	transcription factor (DREB)	0.05	OrthoFinder output from all 47 species
Gb_08035	tny	transcription factor (DREB)	0.06	OrthoFinder output from all 47 species
Gb_29168	DREB26	Ethylene-responsive transcription factor ERF012...	0.03	OrthoFinder output from all 47 species
Gb_34844	ERF-1, ATERF-1	transcription factor (ERF)	0.04	OrthoFinder output from all 47 species
LOC_Os01g10370.1	tny, LOC_Os01g10370	transcription factor (DREB)	0.04	OrthoFinder output from all 47 species
LOC_Os02g35240.1	LOC_Os02g35240	transcription factor (DREB)	0.04	OrthoFinder output from all 47 species
LOC_Os05g29810.1	ERF72, EBP,...	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
MA_10430769g0010	tny	transcription factor (DREB)	0.04	OrthoFinder output from all 47 species
MA_15251g0010	tny	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
MA_30120g0010	DRN-LIKE, ESR2,...	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
MA_436575g0010	TINY2	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
MA_500288g0010	ABI4, SAN5,...	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
MA_66442g0010	No alias	transcription factor (ERF)	0.05	OrthoFinder output from all 47 species
MA_9160409g0010	No alias	transcription factor (ERF)	0.05	OrthoFinder output from all 47 species
Nbi_g04002	ATERF12, ERF12	subgroup ERF-VIII transcription factor & original...	0.04	OrthoFinder output from all 47 species
Nbi_g19264	No alias	subgroup ERF-IV/DREB2 transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ore_g07819	DREB2A, DREB2	subgroup ERF-IV/DREB2 transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ore_g18953	ATERF12, ERF12	subgroup ERF-VIII transcription factor & original...	0.05	OrthoFinder output from all 47 species
Pir_g26105	RAP2.12	transcription factor component *(HRE/RAP2.12) of...	0.04	OrthoFinder output from all 47 species
Pir_g43460	DREB26	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Pnu_g25395	DREB2A, DREB2	subgroup ERF-IV/DREB2 transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0147.g023147	No alias	not classified & original description: CDS=1-1539	0.02	OrthoFinder output from all 47 species
Solyc03g114440.1.1	RAP2.11, Solyc03g114440	transcription factor (ERF). transcription factor (ERN1)	0.04	OrthoFinder output from all 47 species
Solyc03g118190.4.1	Solyc03g118190	transcription factor (ERF)	0.04	OrthoFinder output from all 47 species
Solyc04g080910.1.1	Solyc04g080910	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
Solyc06g065820.3.1	Solyc06g065820	transcription factor (ERF)	0.05	OrthoFinder output from all 47 species
Zm00001e014413_P001	Zm00001e014413	transcription factor (DREB)	0.04	OrthoFinder output from all 47 species
Zm00001e019566_P001	ATERF12, ERF12,...	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
Zm00001e022864_P001	ESR1, DRN, Zm00001e022864	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
Zm00001e027350_P001	ATERF12, ERF12,...	transcription factor (ERF)	0.05	OrthoFinder output from all 47 species
Zm00001e032032_P001	ATERF12, ERF12,...	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
Zm00001e034741_P001	RAP2.11, Zm00001e034741	transcription factor (ERF). transcription factor (ERN1)	0.03	OrthoFinder output from all 47 species
Zm00001e035811_P001	PUCHI, Zm00001e035811	transcription factor (ERF)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	17	66

External Links

No external refs found!

AT1G12630

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation