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AT1G09890


Description : Rhamnogalacturonate lyase family protein


Gene families : OG0001248 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001248_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G09890

Target Alias Description ECC score Gene Family Method Actions
LOC_Os12g03790.1 LOC_Os12g03790 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g44605 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc04g076640.3.1 Solyc04g076640 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc11g011280.3.1 Solyc11g011280 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e021493_P001 Zm00001e021493 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
MF GO:0016829 lyase activity ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0001666 response to hypoxia IEP HCCA
MF GO:0004364 glutathione transferase activity IEP HCCA
BP GO:0005985 sucrose metabolic process IEP HCCA
BP GO:0005986 sucrose biosynthetic process IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0006749 glutathione metabolic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
MF GO:0016157 sucrose synthase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0019374 galactolipid metabolic process IEP HCCA
BP GO:0019375 galactolipid biosynthetic process IEP HCCA
BP GO:0033037 polysaccharide localization IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0036293 response to decreased oxygen levels IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0052545 callose localization IEP HCCA
BP GO:0070482 response to oxygen levels IEP HCCA
BP GO:0080165 callose deposition in phloem sieve plate IEP HCCA
BP GO:0080167 response to karrikin IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR029413 RG-lyase_II 342 411
IPR010325 Rhamnogal_lyase 1 184
IPR029411 RG-lyase_III 426 612
No external refs found!