| BP | GO:0000226 | microtubule cytoskeleton organization | None | Extended |
| BP | GO:0003006 | developmental process involved in reproduction | None | Extended |
| MF | GO:0003674 | molecular_function | None | Extended |
| MF | GO:0003824 | catalytic activity | None | Extended |
| MF | GO:0004672 | protein kinase activity | None | Extended |
| MF | GO:0004674 | protein serine/threonine kinase activity | None | Extended |
| CC | GO:0005575 | cellular_component | None | Extended |
| CC | GO:0005634 | nucleus | IDA | Interproscan |
| CC | GO:0005634 | nucleus | ISM | Interproscan |
| CC | GO:0005737 | cytoplasm | IDA | Interproscan |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | None | Extended |
| BP | GO:0006259 | DNA metabolic process | None | Extended |
| BP | GO:0006260 | DNA replication | RCA | Interproscan |
| BP | GO:0006270 | DNA replication initiation | RCA | Interproscan |
| BP | GO:0006275 | regulation of DNA replication | RCA | Interproscan |
| BP | GO:0006304 | DNA modification | None | Extended |
| BP | GO:0006305 | DNA alkylation | None | Extended |
| BP | GO:0006306 | DNA methylation | RCA | Interproscan |
| BP | GO:0006479 | protein methylation | None | Extended |
| BP | GO:0006725 | cellular aromatic compound metabolic process | None | Extended |
| BP | GO:0006807 | nitrogen compound metabolic process | None | Extended |
| BP | GO:0006996 | organelle organization | None | Extended |
| BP | GO:0007010 | cytoskeleton organization | None | Extended |
| BP | GO:0007017 | microtubule-based process | None | Extended |
| BP | GO:0007051 | spindle organization | None | Extended |
| BP | GO:0007346 | regulation of mitotic cell cycle | None | Extended |
| BP | GO:0008150 | biological_process | None | Extended |
| BP | GO:0008152 | metabolic process | None | Extended |
| BP | GO:0008213 | protein alkylation | None | Extended |
| BP | GO:0008283 | cell population proliferation | RCA | Interproscan |
| BP | GO:0009892 | negative regulation of metabolic process | None | Extended |
| BP | GO:0009909 | regulation of flower development | RCA | Interproscan |
| BP | GO:0009987 | cellular process | None | Extended |
| BP | GO:0010389 | regulation of G2/M transition of mitotic cell cycle | RCA | Interproscan |
| BP | GO:0010468 | regulation of gene expression | None | Extended |
| BP | GO:0010564 | regulation of cell cycle process | None | Extended |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | None | Extended |
| BP | GO:0010629 | negative regulation of gene expression | None | Extended |
| BP | GO:0016043 | cellular component organization | None | Extended |
| MF | GO:0016301 | kinase activity | None | Extended |
| BP | GO:0016458 | obsolete gene silencing | RCA | Interproscan |
| BP | GO:0016570 | histone modification | RCA | Interproscan |
| BP | GO:0016571 | histone methylation | None | Extended |
| MF | GO:0016740 | transferase activity | None | Extended |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | None | Extended |
| MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | None | Extended |
| BP | GO:0018022 | peptidyl-lysine methylation | None | Extended |
| BP | GO:0018193 | peptidyl-amino acid modification | None | Extended |
| BP | GO:0018205 | peptidyl-lysine modification | None | Extended |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | None | Extended |
| BP | GO:0019222 | regulation of metabolic process | None | Extended |
| BP | GO:0019538 | protein metabolic process | None | Extended |
| BP | GO:0022402 | cell cycle process | None | Extended |
| BP | GO:0022414 | reproductive process | None | Extended |
| BP | GO:0022607 | cellular component assembly | None | Extended |
| BP | GO:0031047 | RNA-mediated gene silencing | RCA | Interproscan |
| BP | GO:0031323 | regulation of cellular metabolic process | None | Extended |
| BP | GO:0032259 | methylation | None | Extended |
| BP | GO:0032502 | developmental process | None | Extended |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | None | Extended |
| BP | GO:0034968 | histone lysine methylation | RCA | Interproscan |
| MF | GO:0035173 | histone kinase activity | None | Extended |
| MF | GO:0035184 | histone threonine kinase activity | None | Extended |
| MF | GO:0035402 | histone H3T11 kinase activity | IDA | Interproscan |
| BP | GO:0035407 | obsolete histone H3-T11 phosphorylation | IDA | Interproscan |
| BP | GO:0036211 | protein modification process | None | Extended |
| BP | GO:0043170 | macromolecule metabolic process | None | Extended |
| CC | GO:0043226 | organelle | None | Extended |
| CC | GO:0043227 | membrane-bounded organelle | None | Extended |
| CC | GO:0043229 | intracellular organelle | None | Extended |
| CC | GO:0043231 | intracellular membrane-bounded organelle | None | Extended |
| BP | GO:0043412 | macromolecule modification | None | Extended |
| BP | GO:0043414 | macromolecule methylation | None | Extended |
| BP | GO:0044237 | cellular metabolic process | None | Extended |
| BP | GO:0044238 | primary metabolic process | None | Extended |
| BP | GO:0044260 | cellular macromolecule metabolic process | None | Extended |
| BP | GO:0044728 | DNA methylation or demethylation | None | Extended |
| BP | GO:0046483 | heterocycle metabolic process | None | Extended |
| BP | GO:0048449 | floral organ formation | RCA | Interproscan |
| BP | GO:0048451 | petal formation | RCA | Interproscan |
| BP | GO:0048453 | sepal formation | RCA | Interproscan |
| BP | GO:0048519 | negative regulation of biological process | None | Extended |
| BP | GO:0048580 | regulation of post-embryonic development | None | Extended |
| BP | GO:0048646 | anatomical structure formation involved in morphogenesis | None | Extended |
| BP | GO:0048831 | regulation of shoot system development | None | Extended |
| BP | GO:0050789 | regulation of biological process | None | Extended |
| BP | GO:0050793 | regulation of developmental process | None | Extended |
| BP | GO:0050794 | regulation of cellular process | None | Extended |
| BP | GO:0051052 | regulation of DNA metabolic process | None | Extended |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | None | Extended |
| BP | GO:0051225 | spindle assembly | RCA | Interproscan |
| BP | GO:0051239 | regulation of multicellular organismal process | None | Extended |
| BP | GO:0051567 | histone H3-K9 methylation | RCA | Interproscan |
| BP | GO:0051726 | regulation of cell cycle | RCA | Interproscan |
| BP | GO:0060255 | regulation of macromolecule metabolic process | None | Extended |
| BP | GO:0061647 | histone H3-K9 modification | None | Extended |
| BP | GO:0065007 | biological regulation | None | Extended |
| BP | GO:0070925 | organelle assembly | None | Extended |
| BP | GO:0071704 | organic substance metabolic process | None | Extended |
| BP | GO:0071840 | cellular component organization or biogenesis | None | Extended |
| MF | GO:0072354 | histone H3T3 kinase activity | IDA | Interproscan |
| BP | GO:0072355 | obsolete histone H3-T3 phosphorylation | IDA | Interproscan |
| BP | GO:0080090 | regulation of primary metabolic process | None | Extended |
| BP | GO:0090304 | nucleic acid metabolic process | None | Extended |
| CC | GO:0110165 | cellular anatomical entity | None | Extended |
| MF | GO:0140096 | catalytic activity, acting on a protein | None | Extended |
| BP | GO:0140694 | non-membrane-bounded organelle assembly | None | Extended |
| BP | GO:1901360 | organic cyclic compound metabolic process | None | Extended |
| BP | GO:1901564 | organonitrogen compound metabolic process | None | Extended |
| BP | GO:1901987 | regulation of cell cycle phase transition | None | Extended |
| BP | GO:1901990 | regulation of mitotic cell cycle phase transition | None | Extended |
| BP | GO:1902749 | regulation of cell cycle G2/M phase transition | None | Extended |
| BP | GO:1905393 | plant organ formation | None | Extended |
| BP | GO:2000026 | regulation of multicellular organismal development | None | Extended |
| BP | GO:2000241 | regulation of reproductive process | None | Extended |