AT1G09210 (CRT1b, AtCRT1b)

Aliases : CRT1b, AtCRT1b

Description : calreticulin 1b

Gene families : OG0000812 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000812_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G09210

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00024290	AtCRT1a, CRT1a,...	Protein modification.protein folding and quality...	0.06	OrthoFinder output from all 47 species
Adi_g011348	AtCRT3, EBS2, CRT3, PSL1	component *(CRT3) of ER luminal chaperone complex &...	0.07	OrthoFinder output from all 47 species
Adi_g054253	AtCRT3, EBS2, CRT3, PSL1	ER luminal lectin chaperone *(CRT) & original description: none	0.05	OrthoFinder output from all 47 species
Adi_g057356	AtCRT1a, CRT1a, CRT1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g057357	AtCRT1a, CRT1a, CRT1	ER luminal lectin chaperone *(CRT) & original description: none	0.05	OrthoFinder output from all 47 species
Adi_g057358	CRT1b, AtCRT1b	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g079758	CRT1b, AtCRT1b	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g106042	CRT1b, AtCRT1b	ER luminal lectin chaperone *(CRT) & original description: none	0.05	OrthoFinder output from all 47 species
Adi_g106043	CRT1b, AtCRT1b	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g26121	AtCRT1a, CRT1a, CRT1	ER luminal lectin chaperone *(CRT) & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g09257	AtCRT1a, CRT1a, CRT1	ER luminal lectin chaperone *(CRT) & original description: none	0.04	OrthoFinder output from all 47 species
Als_g10127	AtCRT1a, CRT1a, CRT1	ER luminal lectin chaperone *(CRT) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g33386	AtCRT1a, CRT1a, CRT1	ER luminal lectin chaperone *(CRT) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g02130	AtCRT3, EBS2, CRT3, PSL1	ER luminal lectin chaperone *(CRT) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g02547	AtCRT1a, CRT1a, CRT1	ER luminal lectin chaperone *(CRT) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene53829.t1	AtCRT1a, CRT1a,...	ER luminal lectin chaperone *(CRT) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.13G021500.1	AtCRT1a, CRT1a,...	ER luminal lectin chaperone *(CRT) & original...	0.04	OrthoFinder output from all 47 species
Ceric.25G042300.1	AtCRT3, EBS2,...	ER luminal lectin chaperone *(CRT) & original...	0.02	OrthoFinder output from all 47 species
Cre01.g038400	AtCRT1a, CRT1a, CRT1	Protein modification.protein folding and quality...	0.05	OrthoFinder output from all 47 species
Dcu_g22860	AtCRT1a, CRT1a, CRT1	ER luminal lectin chaperone *(CRT) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g06184	AtCRT1a, CRT1a, CRT1	ER luminal lectin chaperone *(CRT) & original description: none	0.03	OrthoFinder output from all 47 species
Gb_07615	AtCRT1a, CRT1a, CRT1	lectin chaperone (CRT)	0.03	OrthoFinder output from all 47 species
LOC_Os07g14270.1	AtCRT1a, CRT1a,...	lectin chaperone (CRT)	0.07	OrthoFinder output from all 47 species
Len_g39201	AtCRT1a, CRT1a, CRT1	ER luminal lectin chaperone *(CRT) & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g10816	AtCRT3, EBS2, CRT3, PSL1	component *(CRT3) of ER luminal chaperone complex &...	0.03	OrthoFinder output from all 47 species
Ore_g18394	AtCRT3, EBS2, CRT3, PSL1	ER luminal lectin chaperone *(CRT) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g04588	AtCRT1a, CRT1a, CRT1	ER luminal lectin chaperone *(CRT) & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g39131	CRT1b, AtCRT1b	ER luminal lectin chaperone *(CRT) & original description: none	0.02	OrthoFinder output from all 47 species
Smo144212	CRT1b, AtCRT1b	Protein modification.protein folding and quality...	0.04	OrthoFinder output from all 47 species
Solyc01g100380.4.1	AtCRT1a, CRT1a,...	lectin chaperone (CRT)	0.07	OrthoFinder output from all 47 species
Solyc04g048900.3.1	AtCRT3, EBS2,...	lectin chaperone (CRT)	0.05	OrthoFinder output from all 47 species
Spa_g07048	AtCRT1a, CRT1a, CRT1	ER luminal lectin chaperone *(CRT) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e033207_P002	AtCRT1a, CRT1a,...	lectin chaperone (CRT)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000302	response to reactive oxygen species	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005509	calcium ion binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005773	vacuole	IDA	Interproscan
CC	GO:0005783	endoplasmic reticulum	IDA	Interproscan
BP	GO:0006457	protein folding	RCA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0006979	response to oxidative stress	IDA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009408	response to heat	RCA	Interproscan
BP	GO:0009416	response to light stimulus	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009627	systemic acquired resistance	RCA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009642	response to light intensity	None	Extended
BP	GO:0009644	response to high light intensity	RCA	Interproscan
BP	GO:0009651	response to salt stress	IEP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034976	response to endoplasmic reticulum stress	RCA	Interproscan
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042542	response to hydrogen peroxide	RCA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
CC	GO:0048046	apoplast	IDA	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000322	storage vacuole	IEP	HCCA
CC	GO:0000323	lytic vacuole	IEP	HCCA
CC	GO:0000325	plant-type vacuole	IEP	HCCA
CC	GO:0000326	protein storage vacuole	IEP	HCCA
CC	GO:0000327	lytic vacuole within protein storage vacuole	IEP	HCCA
MF	GO:0003756	protein disulfide isomerase activity	IEP	HCCA
MF	GO:0003878	ATP citrate synthase activity	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005788	endoplasmic reticulum lumen	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006084	acetyl-CoA metabolic process	IEP	HCCA
BP	GO:0006085	acetyl-CoA biosynthetic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006637	acyl-CoA metabolic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	IEP	HCCA
BP	GO:0006984	ER-nucleus signaling pathway	IEP	HCCA
MF	GO:0008565	obsolete protein transporter activity	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009306	protein secretion	IEP	HCCA
CC	GO:0009346	ATP-independent citrate lyase complex	IEP	HCCA
CC	GO:0009505	plant-type cell wall	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009934	regulation of meristem structural organization	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
BP	GO:0010043	response to zinc ion	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016129	phytosteroid biosynthetic process	IEP	HCCA
BP	GO:0016132	brassinosteroid biosynthetic process	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	HCCA
MF	GO:0016864	intramolecular oxidoreductase activity, transposing S-S bonds	IEP	HCCA
BP	GO:0016926	protein desumoylation	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
BP	GO:0032940	secretion by cell	IEP	HCCA
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0033866	nucleoside bisphosphate biosynthetic process	IEP	HCCA
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034030	ribonucleoside bisphosphate biosynthetic process	IEP	HCCA
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034033	purine nucleoside bisphosphate biosynthetic process	IEP	HCCA
BP	GO:0035383	thioester metabolic process	IEP	HCCA
BP	GO:0035384	thioester biosynthetic process	IEP	HCCA
BP	GO:0035592	establishment of protein localization to extracellular region	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
MF	GO:0046912	acyltransferase activity, acyl groups converted into alkyl on transfer	IEP	HCCA
BP	GO:0048316	seed development	IEP	HCCA
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	HCCA
BP	GO:0052033	obsolete pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	IEP	HCCA
BP	GO:0055065	metal ion homeostasis	IEP	HCCA
BP	GO:0055074	calcium ion homeostasis	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0071616	acyl-CoA biosynthetic process	IEP	HCCA
BP	GO:0071692	protein localization to extracellular region	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001580	Calret/calnex	26	261
IPR001580	Calret/calnex	263	336

External Links

No external refs found!

AT1G09210 (CRT1b, AtCRT1b)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation