AT1G08050

Description : Zinc finger (C3HC4-type RING finger) family protein

Gene families : OG0000599 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000599_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G08050

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00148p00068590	evm_27.TU.AmTr_v1...	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
AT3G54780	No alias	Zinc finger (C3HC4-type RING finger) family protein	0.04	OrthoFinder output from all 47 species
Ala_g02465	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g15196	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g18978	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g30427	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g13092	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene22775.t1	Aspi01Gene22775	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.09G060200.1	Ceric.09G060200	not classified & original description: pacid=50588484...	0.03	OrthoFinder output from all 47 species
Ceric.24G014600.1	Ceric.24G014600	not classified & original description: pacid=50629291...	0.03	OrthoFinder output from all 47 species
Ceric.37G014900.1	Ceric.37G014900	not classified & original description: pacid=50616887...	0.03	OrthoFinder output from all 47 species
Dac_g23044	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g38041	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g50945	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g10552	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01009240001	No alias	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01016259001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
LOC_Os04g01160.1	LOC_Os04g01160	ubiquitin protein ligase (WAV3)	0.04	OrthoFinder output from all 47 species
LOC_Os06g05990.1	LOC_Os06g05990	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
LOC_Os08g03270.1	LOC_Os08g03270	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.08	OrthoFinder output from all 47 species
LOC_Os10g32740.1	LOC_Os10g32740	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
LOC_Os10g32760.1	LOC_Os10g32760	Probable E3 ubiquitin-protein ligase WAVH2...	0.04	OrthoFinder output from all 47 species
MA_11225g0010	No alias	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
MA_218345g0010	No alias	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Msp_g24649	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g63138	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc02g091710.3.1	Solyc02g091710	ubiquitin protein ligase (WAV3)	0.04	OrthoFinder output from all 47 species
Solyc05g056140.4.1	Solyc05g056140	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Spa_g14357	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g14647	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g38756	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g10599	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e000344_P001	Zm00001e000344	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.09	OrthoFinder output from all 47 species
Zm00001e004621_P001	Zm00001e004621	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.08	OrthoFinder output from all 47 species
Zm00001e008822_P002	Zm00001e008822	ubiquitin protein ligase (WAV3)	0.03	OrthoFinder output from all 47 species
Zm00001e010994_P001	Zm00001e010994	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
Zm00001e012729_P001	Zm00001e012729	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
Zm00001e040514_P001	Zm00001e040514	ubiquitin protein ligase (WAV3)	0.04	OrthoFinder output from all 47 species
Zm00001e041206_P001	Zm00001e041206	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000165	MAPK cascade	RCA	Interproscan
BP	GO:0002682	regulation of immune system process	None	Extended
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006497	protein lipidation	None	Extended
BP	GO:0006498	N-terminal protein lipidation	None	Extended
BP	GO:0006499	N-terminal protein myristoylation	RCA	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0007154	cell communication	RCA	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009308	amine metabolic process	None	Extended
BP	GO:0009409	response to cold	RCA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009620	response to fungus	None	Extended
BP	GO:0009627	systemic acquired resistance	RCA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009690	cytokinin metabolic process	RCA	Interproscan
BP	GO:0009696	salicylic acid metabolic process	None	Extended
BP	GO:0009697	salicylic acid biosynthetic process	RCA	Interproscan
BP	GO:0009738	abscisic acid-activated signaling pathway	RCA	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009863	salicylic acid mediated signaling pathway	None	Extended
BP	GO:0009867	jasmonic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010363	regulation of plant-type hypersensitive response	RCA	Interproscan
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0015031	protein transport	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0018377	protein myristoylation	None	Extended
BP	GO:0018958	phenol-containing compound metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0030968	endoplasmic reticulum unfolded protein response	RCA	Interproscan
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0031348	negative regulation of defense response	RCA	Interproscan
BP	GO:0031365	N-terminal protein amino acid modification	None	Extended
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034976	response to endoplasmic reticulum stress	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042445	hormone metabolic process	None	Extended
BP	GO:0042537	benzene-containing compound metabolic process	None	Extended
BP	GO:0043067	regulation of programmed cell death	None	Extended
BP	GO:0043069	negative regulation of programmed cell death	RCA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0043543	protein acylation	None	Extended
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045088	regulation of innate immune response	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046189	phenol-containing compound biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050832	defense response to fungus	RCA	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051668	localization within membrane	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060548	negative regulation of cell death	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072330	monocarboxylic acid biosynthetic process	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901617	organic hydroxy compound biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004674	protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	HCCA
MF	GO:0004722	protein serine/threonine phosphatase activity	IEP	HCCA
MF	GO:0004723	calcium-dependent protein serine/threonine phosphatase activity	IEP	HCCA
MF	GO:0005451	obsolete monoatomic cation:proton antiporter activity	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
CC	GO:0005768	endosome	IEP	HCCA
CC	GO:0005770	late endosome	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006814	sodium ion transport	IEP	HCCA
BP	GO:0006865	amino acid transport	IEP	HCCA
BP	GO:0006885	regulation of pH	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0010150	leaf senescence	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015081	sodium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015297	antiporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
MF	GO:0015385	sodium:proton antiporter activity	IEP	HCCA
BP	GO:0015849	organic acid transport	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
CC	GO:0031410	cytoplasmic vesicle	IEP	HCCA
CC	GO:0031982	vesicle	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0035725	sodium ion transmembrane transport	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
BP	GO:0042592	homeostatic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0046777	protein autophosphorylation	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0048878	chemical homeostasis	IEP	HCCA
BP	GO:0050801	monoatomic ion homeostasis	IEP	HCCA
MF	GO:0051139	metal cation:proton antiporter activity	IEP	HCCA
BP	GO:0055080	monoatomic cation homeostasis	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA
BP	GO:0090693	plant organ senescence	IEP	HCCA
CC	GO:0097708	intracellular vesicle	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
MF	GO:0140828	metal cation:monoatomic cation antiporter activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	69	98
IPR032838	Vwaint_dom	551	623
IPR002035	VWF_A	204	378

External Links

No external refs found!

AT1G08050

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation