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AT1G07590


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G07590
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AT1G43010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT2G20720 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G11380 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
Pir_g35800 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0046686 response to cadmium ion IEP Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0003865 3-oxo-5-alpha-steroid 4-dehydrogenase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004564 beta-fructofuranosidase activity IEP HCCA
MF GO:0004575 sucrose alpha-glucosidase activity IEP HCCA
MF GO:0005351 carbohydrate:proton symporter activity IEP HCCA
MF GO:0005402 carbohydrate:monoatomic cation symporter activity IEP HCCA
BP GO:0005983 starch catabolic process IEP HCCA
MF GO:0008506 sucrose:proton symporter activity IEP HCCA
MF GO:0008515 sucrose transmembrane transporter activity IEP HCCA
BP GO:0009251 glucan catabolic process IEP HCCA
MF GO:0009669 sucrose:monoatomic cation symporter activity IEP HCCA
BP GO:0009692 ethylene metabolic process IEP HCCA
BP GO:0009693 ethylene biosynthetic process IEP HCCA
BP GO:0010029 regulation of seed germination IEP HCCA
MF GO:0015144 carbohydrate transmembrane transporter activity IEP HCCA
MF GO:0015154 disaccharide transmembrane transporter activity IEP HCCA
MF GO:0015157 oligosaccharide transmembrane transporter activity IEP HCCA
MF GO:0015295 solute:proton symporter activity IEP HCCA
MF GO:0015926 glucosidase activity IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0016229 steroid dehydrogenase activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0033765 steroid dehydrogenase activity, acting on the CH-CH group of donors IEP HCCA
BP GO:0040034 regulation of development, heterochronic IEP HCCA
BP GO:0043449 cellular alkene metabolic process IEP HCCA
BP GO:0043450 alkene biosynthetic process IEP HCCA
BP GO:0044247 cellular polysaccharide catabolic process IEP HCCA
BP GO:0044275 cellular carbohydrate catabolic process IEP HCCA
BP GO:0048506 regulation of timing of meristematic phase transition IEP HCCA
BP GO:0048509 regulation of meristem development IEP HCCA
BP GO:0048510 regulation of timing of transition from vegetative to reproductive phase IEP HCCA
MF GO:0090599 alpha-glucosidase activity IEP HCCA
BP GO:1900140 regulation of seedling development IEP HCCA
BP GO:1900673 olefin metabolic process IEP HCCA
BP GO:1900674 olefin biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 457 480
IPR002885 Pentatricopeptide_repeat 349 367
IPR002885 Pentatricopeptide_repeat 169 196
IPR002885 Pentatricopeptide_repeat 227 277
IPR002885 Pentatricopeptide_repeat 378 422
No external refs found!