AT1G06230 (GTE4)

Aliases : GTE4

Description : global transcription factor group E4

Gene families : OG0000177 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000177_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G06230

Target	Alias	Description	ECC score	Gene Family Method
AT5G46550	No alias	DNA-binding bromodomain-containing protein	0.05	OrthoFinder output from all 47 species
Adi_g009282	GTE3	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Adi_g009781	GTE4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g050232	BET9, ATBET9	transcriptional co-activator *(BET/GTE) & original...	0.02	OrthoFinder output from all 47 species
Adi_g057352	GTE3	transcriptional co-activator *(BET/GTE) & original...	0.02	OrthoFinder output from all 47 species
Adi_g075932	GTE3	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Adi_g076959	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g086860	GTE4	transcriptional co-activator *(BET/GTE) & original...	0.04	OrthoFinder output from all 47 species
Adi_g086861	GTE8	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g094613	GTE3	transcriptional co-activator *(BET/GTE) & original...	0.04	OrthoFinder output from all 47 species
Adi_g114774	GTE4	transcriptional co-activator *(BET/GTE) & original...	0.06	OrthoFinder output from all 47 species
Adi_g116688	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g06161	GTE8	transcriptional co-activator *(BET/GTE) & original...	0.02	OrthoFinder output from all 47 species
Aev_g14444	GTE4	transcriptional co-activator *(BET/GTE) & original...	0.02	OrthoFinder output from all 47 species
Aev_g18513	GTE4	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Ala_g16591	GTE4	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Als_g12929	GTE4	transcriptional co-activator *(BET/GTE) & original...	0.06	OrthoFinder output from all 47 species
Als_g34018	BET9, ATBET9	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Als_g63818	GTE6	transcriptional co-activator *(BET/GTE) & original...	0.04	OrthoFinder output from all 47 species
Aob_g06548	GTE6	transcriptional co-activator *(BET/GTE) & original...	0.02	OrthoFinder output from all 47 species
Aob_g09032	BET9, ATBET9	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Aop_g06213	GTE4	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0059.g034649	BET9, ATBET9	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Cba_g05911	GTE4	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Cba_g12426	GTE4	transcriptional co-activator *(BET/GTE) & original...	0.05	OrthoFinder output from all 47 species
Cba_g27575	GTE3	transcriptional co-activator *(BET/GTE) & original...	0.02	OrthoFinder output from all 47 species
Cba_g36354	GTE3	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Cba_g61631	GTE7	transcriptional co-activator *(BET/GTE) & original...	0.02	OrthoFinder output from all 47 species
Cba_g72722	BET9, ATBET9	transcriptional co-activator *(BET/GTE) & original...	0.02	OrthoFinder output from all 47 species
Ceric.01G079700.1	GTE8, Ceric.01G079700	transcriptional co-activator *(BET/GTE) & original...	0.06	OrthoFinder output from all 47 species
Ceric.28G020800.1	GTE4, Ceric.28G020800	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Ceric.38G016200.1	BET9, ATBET9,...	transcriptional co-activator *(BET/GTE) & original...	0.07	OrthoFinder output from all 47 species
Cre01.g048900	No alias	No description available	0.02	OrthoFinder output from all 47 species
Cre03.g168050	No alias	Transcription factor GTE1 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Cre08.g367300	BET9, ATBET9	Transcription factor GTE3, chloroplastic OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Dcu_g08190	GTE4	transcriptional co-activator *(BET/GTE) & original...	0.09	OrthoFinder output from all 47 species
Dcu_g32392	GTE8	transcriptional co-activator *(BET/GTE) & original...	0.04	OrthoFinder output from all 47 species
Ehy_g01035	GTE6	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Ehy_g32331	GTE8	transcriptional co-activator *(BET/GTE) & original...	0.05	OrthoFinder output from all 47 species
GSVIVT01008492001	NPX1	Transcription factor GTE10 OS=Arabidopsis thaliana	0.06	OrthoFinder output from all 47 species
GSVIVT01014233001	GTE4	Transcription factor GTE4 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
GSVIVT01020670001	GTE4	Transcription factor GTE4 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Gb_04671	NPX1	transcriptional co-activator (BET/GTE)	0.05	OrthoFinder output from all 47 species
LOC_Os01g11580.1	GTE4, LOC_Os01g11580	transcriptional co-activator (BET/GTE)	0.1	OrthoFinder output from all 47 species
LOC_Os02g15220.2	GTE4, LOC_Os02g15220	transcriptional co-activator (BET/GTE)	0.04	OrthoFinder output from all 47 species
LOC_Os02g38980.1	BET9, ATBET9,...	transcriptional co-activator (BET/GTE)	0.03	OrthoFinder output from all 47 species
LOC_Os04g53170.1	GTE7, LOC_Os04g53170	transcriptional co-activator (BET/GTE)	0.02	OrthoFinder output from all 47 species
Len_g17766	GTE3	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Len_g40831	GTE4	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Lfl_g01559	GTE6	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Lfl_g04029	GTE6	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
MA_18020g0010	GTE4	transcriptional co-activator (BET/GTE)	0.04	OrthoFinder output from all 47 species
Mp2g23150.1	GTE7	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp5g24260.1	GTE6	transcriptional co-activator (BET/GTE)	0.02	OrthoFinder output from all 47 species
Msp_g31154	GTE4	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Nbi_g01174	GTE4	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Nbi_g02143	GTE4	transcriptional co-activator *(BET/GTE) & original...	0.05	OrthoFinder output from all 47 species
Nbi_g12675	GTE4	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Ore_g00675	GTE4	transcriptional co-activator *(BET/GTE) & original...	0.04	OrthoFinder output from all 47 species
Ore_g02750	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g30636	GTE4	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Pir_g04263	BET9, ATBET9	transcriptional co-activator *(BET/GTE) & original...	0.06	OrthoFinder output from all 47 species
Pir_g19514	GTE4	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Pnu_g25213	GTE1, GTE01, IMB1	transcriptional co-activator *(BET/GTE) & original...	0.02	OrthoFinder output from all 47 species
Ppi_g38970	GTE4	transcriptional co-activator *(BET/GTE) & original...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0131.g022083	GTE4	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0137.g022457	GTE3	transcriptional co-activator *(BET/GTE) & original...	0.05	OrthoFinder output from all 47 species
Sam_g12555	No alias	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Sam_g13117	No alias	transcriptional co-activator *(BET/GTE) & original...	0.02	OrthoFinder output from all 47 species
Sam_g14422	No alias	transcriptional co-activator *(BET/GTE) & original...	0.05	OrthoFinder output from all 47 species
Sam_g20005	No alias	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Sam_g28425	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Smo83947	GTE3	Transcription factor GTE9 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Solyc02g091660.3.1	GTE7, Solyc02g091660	transcriptional co-activator (BET/GTE)	0.02	OrthoFinder output from all 47 species
Solyc07g062660.4.1	GTE4, Solyc07g062660	transcriptional co-activator (BET/GTE)	0.04	OrthoFinder output from all 47 species
Solyc10g008070.4.1	GTE4, Solyc10g008070	Transcription factor GTE4 OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
Spa_g18573	GTE3	transcriptional co-activator *(BET/GTE) & original...	0.04	OrthoFinder output from all 47 species
Spa_g22072	GTE4	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Spa_g26387	GTE4	transcriptional co-activator *(BET/GTE) & original...	0.02	OrthoFinder output from all 47 species
Spa_g26928	GTE4	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Tin_g10331	GTE4	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Tin_g31516	GTE3	transcriptional co-activator *(BET/GTE) & original...	0.03	OrthoFinder output from all 47 species
Zm00001e009037_P001	Zm00001e009037	transcriptional co-activator (BET/GTE)	0.04	OrthoFinder output from all 47 species
Zm00001e014297_P001	GTE4, Zm00001e014297	transcriptional co-activator (BET/GTE)	0.04	OrthoFinder output from all 47 species
Zm00001e021805_P005	BET9, ATBET9,...	transcriptional co-activator (BET/GTE)	0.03	OrthoFinder output from all 47 species
Zm00001e024513_P001	Zm00001e024513	transcriptional co-activator (BET/GTE)	0.06	OrthoFinder output from all 47 species
Zm00001e024861_P001	GTE4, Zm00001e024861	transcriptional co-activator (BET/GTE)	0.05	OrthoFinder output from all 47 species
Zm00001e026041_P001	GTE4, Zm00001e026041	transcriptional co-activator (BET/GTE)	0.04	OrthoFinder output from all 47 species
Zm00001e029260_P001	BET9, ATBET9,...	transcriptional co-activator (BET/GTE)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007346	regulation of mitotic cell cycle	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009292	horizontal gene transfer	None	Extended
BP	GO:0009294	DNA-mediated transformation	IMP	Interproscan
BP	GO:0009294	DNA-mediated transformation	RCA	Interproscan
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0045787	positive regulation of cell cycle	None	Extended
BP	GO:0045931	positive regulation of mitotic cell cycle	IMP	Interproscan
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0048364	root development	IMP	Interproscan
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051726	regulation of cell cycle	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0099402	plant organ development	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000785	chromatin	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0004084	branched-chain-amino-acid transaminase activity	IEP	HCCA
MF	GO:0004712	protein serine/threonine/tyrosine kinase activity	IEP	HCCA
CC	GO:0005819	spindle	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0007059	chromosome segregation	IEP	HCCA
CC	GO:0008278	cohesin complex	IEP	HCCA
BP	GO:0008284	positive regulation of cell population proliferation	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0010267	ta-siRNA processing	IEP	HCCA
CC	GO:0016363	nuclear matrix	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
BP	GO:0030422	siRNA processing	IEP	HCCA
BP	GO:0035196	miRNA processing	IEP	HCCA
BP	GO:0042127	regulation of cell population proliferation	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR027353	NET_dom	607	668
IPR001487	Bromodomain	425	507

External Links

No external refs found!

AT1G06230 (GTE4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation