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  5. AT1G06150

AT1G06150 (EMB1444)


Aliases : EMB1444

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein


Gene families : OG0001070 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001070_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G06150

Target Alias Description ECC score Gene Family Method Actions
Ala_g26633 EMB1444 LHW/LHL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07765 LHW LHW/LHL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g07760 LHW LHW/LHL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g11990 EMB1444 LHW/LHL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01037572001 LHW Transcription factor LHW OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os11g06010.1 LHW, LOC_Os11g06010 Transcription factor LHW OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os12g06335.1 LHW, LOC_Os12g06335 Transcription factor LHW OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Len_g14794 No alias LHW/LHL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Mp7g02370.1 LHW Transcription factor LHW OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Pnu_g07449 LHW LHW/LHL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e009089_P003 LHW, Zm00001e009089 Transcription factor LHW OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e015411_P002 LHW, Zm00001e015411 Transcription factor LHW OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e024625_P002 LHW, Zm00001e024625 Transcription factor LHW OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e041446_P005 LHW, Zm00001e041446 Transcription factor LHW OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0009507 chloroplast ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0003002 regionalization IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006972 hyperosmotic response IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
BP GO:0007155 cell adhesion IEP HCCA
BP GO:0009411 response to UV IEP HCCA
BP GO:0009742 brassinosteroid mediated signaling pathway IEP HCCA
BP GO:0009799 specification of symmetry IEP HCCA
BP GO:0009825 multidimensional cell growth IEP HCCA
BP GO:0009855 determination of bilateral symmetry IEP HCCA
BP GO:0009887 animal organ morphogenesis IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010016 shoot system morphogenesis IEP HCCA
BP GO:0010051 xylem and phloem pattern formation IEP HCCA
BP GO:0010053 root epidermal cell differentiation IEP HCCA
BP GO:0010075 regulation of meristem growth IEP HCCA
BP GO:0010090 trichome morphogenesis IEP HCCA
BP GO:0010383 cell wall polysaccharide metabolic process IEP HCCA
BP GO:0010410 hemicellulose metabolic process IEP HCCA
BP GO:0010413 glucuronoxylan metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0021700 developmental maturation IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032879 regulation of localization IEP HCCA
BP GO:0032880 regulation of protein localization IEP HCCA
BP GO:0042538 hyperosmotic salinity response IEP HCCA
BP GO:0043401 steroid hormone mediated signaling pathway IEP HCCA
BP GO:0043473 pigmentation IEP HCCA
BP GO:0043476 pigment accumulation IEP HCCA
BP GO:0043478 pigment accumulation in response to UV light IEP HCCA
BP GO:0043479 pigment accumulation in tissues in response to UV light IEP HCCA
BP GO:0043480 pigment accumulation in tissues IEP HCCA
BP GO:0043481 anthocyanin accumulation in tissues in response to UV light IEP HCCA
BP GO:0044038 cell wall macromolecule biosynthetic process IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
BP GO:0045491 xylan metabolic process IEP HCCA
BP GO:0045492 xylan biosynthetic process IEP HCCA
BP GO:0046777 protein autophosphorylation IEP HCCA
BP GO:0048439 flower morphogenesis IEP HCCA
BP GO:0048469 cell maturation IEP HCCA
BP GO:0048638 regulation of developmental growth IEP HCCA
BP GO:0048764 trichoblast maturation IEP HCCA
BP GO:0048765 root hair cell differentiation IEP HCCA
BP GO:0048767 root hair elongation IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051049 regulation of transport IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0060341 regulation of cellular localization IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070589 cellular component macromolecule biosynthetic process IEP HCCA
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP HCCA
BP GO:0071695 anatomical structure maturation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090627 plant epidermal cell differentiation IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 1171 1196
IPR002885 Pentatricopeptide_repeat 908 933
IPR002885 Pentatricopeptide_repeat 937 965
IPR025610 MYC/MYB_N 5 156
IPR002885 Pentatricopeptide_repeat 995 1043
IPR002885 Pentatricopeptide_repeat 1096 1143
IPR002885 Pentatricopeptide_repeat 834 880
No external refs found!