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  5. AT1G05080

AT1G05080


Description : F-box/RNI-like/FBD-like domains-containing protein


Gene families : OG0004270 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004270_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G05080
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AT1G50980 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 OrthoFinder output from all 47 species
AT1G55030 No alias RNI-like superfamily protein 0.1 OrthoFinder output from all 47 species
AT3G10750 No alias FBD domain family 0.08 OrthoFinder output from all 47 species
AT3G49020 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.08 OrthoFinder output from all 47 species
AT3G49030 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.11 OrthoFinder output from all 47 species
AT3G49040 No alias F-box/RNI-like superfamily protein 0.06 OrthoFinder output from all 47 species
AT3G49045 No alias No description available 0.05 OrthoFinder output from all 47 species
AT3G52690 No alias RNI-like superfamily protein 0.12 OrthoFinder output from all 47 species
AT3G55900 No alias F-box family protein 0.04 OrthoFinder output from all 47 species
AT4G00315 No alias F-box/RNI-like/FBD-like domains-containing protein 0.05 OrthoFinder output from all 47 species
AT4G10410 No alias Leucine-rich repeat (LRR) family protein 0.05 OrthoFinder output from all 47 species
AT4G26350 No alias F-box/RNI-like/FBD-like domains-containing protein 0.11 OrthoFinder output from all 47 species
AT5G11370 No alias FBD / Leucine Rich Repeat domains containing protein 0.02 OrthoFinder output from all 47 species
AT5G38570 No alias F-box/RNI-like superfamily protein 0.09 OrthoFinder output from all 47 species
AT5G38590 No alias F-box/RNI-like/FBD-like domains-containing protein 0.05 OrthoFinder output from all 47 species
AT5G40750 No alias FBD / Leucine Rich Repeat domains containing protein 0.04 OrthoFinder output from all 47 species
AT5G44850 No alias Protein with RNI-like/FBD-like domains 0.06 OrthoFinder output from all 47 species
AT5G52460 EDA41 FBD, F-box and Leucine Rich Repeat domains containing protein 0.04 OrthoFinder output from all 47 species
AT5G56325 No alias FBD-like domain family protein 0.1 OrthoFinder output from all 47 species
AT5G56370 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 OrthoFinder output from all 47 species
AT5G56390 No alias F-box/RNI-like/FBD-like domains-containing protein 0.09 OrthoFinder output from all 47 species
AT5G56400 No alias FBD, F-box, Skp2-like and Leucine Rich Repeat domains... 0.14 OrthoFinder output from all 47 species
AT5G56410 No alias Protein with RNI-like/FBD-like domains 0.04 OrthoFinder output from all 47 species
AT5G56430 No alias F-box/FBD-like domains containing protein 0.14 OrthoFinder output from all 47 species
AT5G56452 No alias FBD-like domain family protein 0.1 OrthoFinder output from all 47 species
AT5G56560 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.09 OrthoFinder output from all 47 species
AT5G56570 No alias Leucine-rich repeat (LRR) family protein 0.08 OrthoFinder output from all 47 species
AT5G56820 No alias F-box/RNI-like/FBD-like domains-containing protein 0.02 OrthoFinder output from all 47 species
AT5G62970 No alias Protein with RNI-like/FBD-like domains 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0000976 transcription cis-regulatory region binding IEP HCCA
MF GO:0000987 cis-regulatory region sequence-specific DNA binding IEP HCCA
MF GO:0001067 transcription regulatory region nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0004108 citrate (Si)-synthase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006266 DNA ligation IEP HCCA
BP GO:0009734 auxin-activated signaling pathway IEP HCCA
BP GO:0009890 negative regulation of biosynthetic process IEP HCCA
BP GO:0010208 pollen wall assembly IEP HCCA
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010927 cellular component assembly involved in morphogenesis IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031327 negative regulation of cellular biosynthetic process IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036440 citrate synthase activity IEP HCCA
BP GO:0045892 negative regulation of DNA-templated transcription IEP HCCA
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
BP GO:0048830 adventitious root development IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051253 negative regulation of RNA metabolic process IEP HCCA
BP GO:0052386 cell wall thickening IEP HCCA
BP GO:0052543 callose deposition in cell wall IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1902679 negative regulation of RNA biosynthetic process IEP HCCA
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR006566 FBD 363 408
IPR001810 F-box_dom 15 53
IPR013101 Leu-rich_rpt_2 163 188
No external refs found!