AT1G03790 (SOM)

Aliases : SOM

Description : Zinc finger C-x8-C-x5-C-x3-H type family protein

Gene families : OG0000156 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000156_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G03790

Target	Alias	Description	ECC score	Gene Family Method
AT5G07500	PEI1	Zinc finger C-x8-C-x5-C-x3-H type family protein	0.07	OrthoFinder output from all 47 species
Adi_g046911	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Ala_g22406	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Als_g20738	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Aspi01Gene28172.t1	Aspi01Gene28172	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Aspi01Gene30050.t1	Aspi01Gene30050	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Aspi01Gene46484.t1	Aspi01Gene46484	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Azfi_s0027.g023744	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Azfi_s0076.g037758	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Azfi_s0203.g057679	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Cba_g03345	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Ceric.05G100900.1	Ceric.05G100900	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Ceric.17G002100.1	ATTZF1, ATCTH,...	regulatory factor *(TZF) of mRNA stress granule...	0.04	OrthoFinder output from all 47 species
Ceric.1Z168000.1	ATTZF1, ATCTH,...	regulatory factor *(TZF) of mRNA stress granule...	0.06	OrthoFinder output from all 47 species
Ceric.24G025600.1	ATTZF1, ATCTH,...	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Cre03.g146267	ATTZF1, ATCTH	RNA biosynthesis.transcriptional activation.C3H zinc...	0.02	OrthoFinder output from all 47 species
Dac_g02872	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Dac_g22345	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Dde_g24183	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Dde_g25533	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Dde_g27978	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
GSVIVT01013901001	PEI1	RNA biosynthesis.transcriptional activation.C3H zinc...	0.06	OrthoFinder output from all 47 species
LOC_Os01g53650.1	LOC_Os01g53650	mRNA-binding regulatory factor (TZF)	0.08	OrthoFinder output from all 47 species
LOC_Os05g03760.1	LOC_Os05g03760	mRNA-binding regulatory factor (TZF)	0.02	OrthoFinder output from all 47 species
LOC_Os05g10670.1	LOC_Os05g10670	mRNA-binding regulatory factor (TZF)	0.03	OrthoFinder output from all 47 species
LOC_Os05g45020.1	ATTZF1, ATCTH,...	mRNA-binding regulatory factor (TZF)	0.02	OrthoFinder output from all 47 species
LOC_Os12g33090.1	LOC_Os12g33090	mRNA-binding regulatory factor (TZF)	0.03	OrthoFinder output from all 47 species
Lfl_g02270	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Lfl_g06722	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Lfl_g28211	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g10175	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Msp_g15903	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Nbi_g10809	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Nbi_g10925	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Ore_g25247	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Ore_g29320	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Ore_g35856	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.05	OrthoFinder output from all 47 species
Pir_g27224	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Pnu_g15715	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Pnu_g16736	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Pnu_g20981	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Pnu_g24839	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Pnu_g25039	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g01109	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.04	OrthoFinder output from all 47 species
Ppi_g10785	ATTZF1, ATCTH	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0030.g010425	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Sam_g04991	No alias	regulatory factor *(TZF) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Solyc05g041720.2.1	PEI1, Solyc05g041720	mRNA-binding regulatory factor (TZF)	0.05	OrthoFinder output from all 47 species
Solyc05g043247.1.1	ATTZF1, ATCTH,...	mRNA-binding regulatory factor (TZF)	0.06	OrthoFinder output from all 47 species
Solyc06g082010.4.1	Solyc06g082010	mRNA-binding regulatory factor (TZF)	0.04	OrthoFinder output from all 47 species
Solyc07g053750.1.1	SOM, Solyc07g053750	mRNA-binding regulatory factor (TZF)	0.13	OrthoFinder output from all 47 species
Solyc09g014640.2.1	PEI1, Solyc09g014640	mRNA-binding regulatory factor (TZF)	0.07	OrthoFinder output from all 47 species
Solyc09g014645.1.1	PEI1, Solyc09g014645	mRNA-binding regulatory factor (TZF)	0.07	OrthoFinder output from all 47 species
Solyc09g150108.1.1	PEI1, Solyc09g150108	mRNA-binding regulatory factor (TZF)	0.04	OrthoFinder output from all 47 species
Solyc12g008660.1.1	Solyc12g008660	mRNA-binding regulatory factor (TZF)	0.03	OrthoFinder output from all 47 species
Zm00001e016582_P001	Zm00001e016582	mRNA-binding regulatory factor (TZF)	0.04	OrthoFinder output from all 47 species
Zm00001e027132_P001	Zm00001e027132	mRNA-binding regulatory factor (TZF)	0.05	OrthoFinder output from all 47 species
Zm00001e027454_P001	ATTZF1, ATCTH,...	mRNA-binding regulatory factor (TZF)	0.04	OrthoFinder output from all 47 species
Zm00001e031293_P001	Zm00001e031293	mRNA-binding regulatory factor (TZF)	0.04	OrthoFinder output from all 47 species
Zm00001e032199_P001	ATTZF1, ATCTH,...	mRNA-binding regulatory factor (TZF)	0.08	OrthoFinder output from all 47 species
Zm00001e035805_P001	PEI1, Zm00001e035805	mRNA-binding regulatory factor (TZF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010029	regulation of seed germination	None	Extended
BP	GO:0010187	negative regulation of seed germination	IMP	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048581	negative regulation of post-embryonic development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051093	negative regulation of developmental process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051241	negative regulation of multicellular organismal process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1900140	regulation of seedling development	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000571	Znf_CCCH	126	148

External Links

No external refs found!

AT1G03790 (SOM)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation