AT1G02840 (At-SR34, SRP34,...)

Aliases : At-SR34, SRP34, ATSRP34, SR34, SR1

Description : RNA-binding (RRM/RBD/RNP motifs) family protein

Gene families : OG0001059 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001059_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G02840

Target	Alias	Description	ECC score	Gene Family Method
Adi_g112402	SR30, ATSRP30, At-SR30	RNA splicing factor *(SR30/34) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g20395	SR30, ATSRP30, At-SR30	RNA splicing factor *(SR30/34) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g13216	SR30, ATSRP30, At-SR30	RNA splicing factor *(SR30/34) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g25959	SR30, ATSRP30, At-SR30	RNA splicing factor *(SR30/34) & original description: none	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000857.20	At-SR34, SRP34,...	RNA processing.RNA splicing.spliceosome-associated...	0.02	OrthoFinder output from all 47 species
Cre01.g026450	At-SR34, SRP34,...	RNA processing.RNA splicing.spliceosome-associated...	0.02	OrthoFinder output from all 47 species
Cre06.g278239	SR30, ATSRP30, At-SR30	RNA processing.RNA splicing.spliceosome-associated...	0.05	OrthoFinder output from all 47 species
Dcu_g36549	SR30, ATSRP30, At-SR30	RNA splicing factor *(SR30/34) & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g08553	SR30, ATSRP30, At-SR30	RNA splicing factor *(SR30/34) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01027997001	At-SR34, SRP34,...	RNA processing.RNA splicing.spliceosome-associated...	0.03	OrthoFinder output from all 47 species
GSVIVT01038636001	At-SR34a, SR34a, SRp34a	RNA processing.RNA splicing.spliceosome-associated...	0.04	OrthoFinder output from all 47 species
Gb_24206	At-SR34, SRP34,...	SR30/34 RNA splicing factor	0.03	OrthoFinder output from all 47 species
LOC_Os03g22380.1	At-SR34, SRP34,...	SR30/34 RNA splicing factor	0.04	OrthoFinder output from all 47 species
Len_g13338	SR30, ATSRP30, At-SR30	RNA splicing factor *(SR30/34) & original description: none	0.02	OrthoFinder output from all 47 species
Len_g20957	SR30, ATSRP30, At-SR30	RNA splicing factor *(SR30/34) & original description: none	0.03	OrthoFinder output from all 47 species
MA_11621g0010	At-SR34a, SR34a, SRp34a	SR30/34 RNA splicing factor	0.05	OrthoFinder output from all 47 species
Msp_g11345	SR30, ATSRP30, At-SR30	RNA splicing factor *(SR30/34) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g02953	SR30, ATSRP30, At-SR30	RNA splicing factor *(SR30/34) & original description: none	0.02	OrthoFinder output from all 47 species
Smo97566	SR30, ATSRP30, At-SR30	RNA processing.RNA splicing.spliceosome-associated...	0.02	OrthoFinder output from all 47 species
Solyc03g082380.4.1	At-SR34a, SR34a,...	SR30/34 RNA splicing factor	0.07	OrthoFinder output from all 47 species
Solyc09g075090.1.1	At-SR34, SRP34,...	SR30/34 RNA splicing factor	0.08	OrthoFinder output from all 47 species
Spa_g17256	At-SR34a, SR34a, SRp34a	RNA splicing factor *(SR30/34) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g19153	At-SR34, SRP34,...	RNA splicing factor *(SR30/34) & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	RCA	Interproscan
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
CC	GO:0016604	nuclear body	None	Extended
CC	GO:0016607	nuclear speck	IDA	Interproscan
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
CC	GO:0035061	interchromatin granule	IDA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000245	spliceosomal complex assembly	IEP	HCCA
BP	GO:0000278	mitotic cell cycle	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
CC	GO:0005635	nuclear envelope	IEP	HCCA
CC	GO:0005681	spliceosomal complex	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005743	mitochondrial inner membrane	IEP	HCCA
CC	GO:0005744	TIM23 mitochondrial import inner membrane translocase complex	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006312	mitotic recombination	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006405	RNA export from nucleus	IEP	HCCA
BP	GO:0006406	mRNA export from nucleus	IEP	HCCA
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
BP	GO:0007049	cell cycle	IEP	HCCA
BP	GO:0008284	positive regulation of cell population proliferation	IEP	HCCA
MF	GO:0008320	protein transmembrane transporter activity	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009314	response to radiation	IEP	HCCA
BP	GO:0009416	response to light stimulus	IEP	HCCA
BP	GO:0009607	response to biotic stimulus	IEP	HCCA
BP	GO:0009617	response to bacterium	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009639	response to red or far red light	IEP	HCCA
BP	GO:0009640	photomorphogenesis	IEP	HCCA
BP	GO:0009648	photoperiodism	IEP	HCCA
BP	GO:0009756	carbohydrate mediated signaling	IEP	HCCA
BP	GO:0009790	embryo development	IEP	HCCA
BP	GO:0009791	post-embryonic development	IEP	HCCA
BP	GO:0009793	embryo development ending in seed dormancy	IEP	HCCA
BP	GO:0009845	seed germination	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
BP	GO:0009933	meristem structural organization	IEP	HCCA
BP	GO:0010048	vernalization response	IEP	HCCA
BP	GO:0010074	maintenance of meristem identity	IEP	HCCA
BP	GO:0010162	seed dormancy process	IEP	HCCA
BP	GO:0010182	sugar mediated signaling pathway	IEP	HCCA
BP	GO:0010222	stem vascular tissue pattern formation	IEP	HCCA
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	HCCA
BP	GO:0010351	lithium ion transport	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
MF	GO:0015450	protein-transporting ATPase activity	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
BP	GO:0016569	obsolete covalent chromatin modification	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019827	stem cell population maintenance	IEP	HCCA
BP	GO:0019915	lipid storage	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0022611	dormancy process	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	HCCA
BP	GO:0030422	siRNA processing	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
BP	GO:0032880	regulation of protein localization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0035196	miRNA processing	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0042127	regulation of cell population proliferation	IEP	HCCA
BP	GO:0042742	defense response to bacterium	IEP	HCCA
MF	GO:0042802	identical protein binding	IEP	HCCA
BP	GO:0043207	response to external biotic stimulus	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0043687	post-translational protein modification	IEP	HCCA
BP	GO:0044030	regulation of DNA methylation	IEP	HCCA
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	HCCA
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0048532	anatomical structure arrangement	IEP	HCCA
BP	GO:0048573	photoperiodism, flowering	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048609	multicellular organismal reproductive process	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0050657	nucleic acid transport	IEP	HCCA
BP	GO:0050658	RNA transport	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0050826	response to freezing	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051028	mRNA transport	IEP	HCCA
BP	GO:0051168	nuclear export	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051235	maintenance of location	IEP	HCCA
BP	GO:0051236	establishment of RNA localization	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051707	response to other organism	IEP	HCCA
BP	GO:0060341	regulation of cellular localization	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0070918	regulatory ncRNA processing	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:0098542	defense response to other organism	IEP	HCCA
BP	GO:0098727	maintenance of cell number	IEP	HCCA
MF	GO:0140318	protein transporter activity	IEP	HCCA
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	121	183
IPR000504	RRM_dom	9	76

External Links

No external refs found!

AT1G02840 (At-SR34, SRP34,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation