AT1G02780 (emb2386)

Aliases : emb2386

Description : Ribosomal protein L19e family protein

Gene families : OG0001435 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001435_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G02780

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00091p00066640	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	OrthoFinder output from all 47 species
Aev_g06873	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aev_g08119	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ala_g28989	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.16	OrthoFinder output from all 47 species
Als_g06897	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Als_g37954	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aob_g06313	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g03394	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Aop_g14682	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.24	OrthoFinder output from all 47 species
Aspi01Gene61028.t1	Aspi01Gene61028	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0006.g009570	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.19	OrthoFinder output from all 47 species
Azfi_s0627.g079994	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Cba_g07141	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cba_g12572	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cba_g12573	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Cba_g48229	emb2386	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Ceric.07G087100.1	Ceric.07G087100	component *(eL19) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Ceric.17G056200.1	Ceric.17G056200	component *(eL19) of large ribosomal-subunit (LSU)...	0.24	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021181.1	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.38	OrthoFinder output from all 47 species
Cre02.g075700	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	OrthoFinder output from all 47 species
Dac_g04507	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Dac_g04939	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g35194	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.23	OrthoFinder output from all 47 species
Dcu_g41239	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Dde_g48535	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ehy_g08158	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ehy_g08169	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
GSVIVT01028052001	emb2386	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
GSVIVT01035096001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.31	OrthoFinder output from all 47 species
Gb_23171	emb2386	component RPL19 of LSU proteome component	0.23	OrthoFinder output from all 47 species
Gb_23172	No alias	component RPL19 of LSU proteome component	0.13	OrthoFinder output from all 47 species
LOC_Os03g21940.1	emb2386, LOC_Os03g21940	component RPL19 of LSU proteome component	0.31	OrthoFinder output from all 47 species
LOC_Os03g38260.1	LOC_Os03g38260	component RPL19 of LSU proteome component	0.3	OrthoFinder output from all 47 species
Len_g04088	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Len_g07146	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Lfl_g06864	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g30375	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
MA_1839g0010	emb2386	component RPL19 of LSU proteome component	0.21	OrthoFinder output from all 47 species
MA_22977g0010	emb2386	component RPL19 of LSU proteome component	0.28	OrthoFinder output from all 47 species
Mp7g09050.1	No alias	component RPL19 of LSU proteome component	0.47	OrthoFinder output from all 47 species
Msp_g06900	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Msp_g18967	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Nbi_g05153	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ore_g43770	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pir_g44205	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pp3c15_5130V3.1	Pp3c15_5130	Ribosomal protein L19e family protein	0.12	OrthoFinder output from all 47 species
Pp3c16_410V3.1	Pp3c16_410	Ribosomal protein L19e family protein	0.26	OrthoFinder output from all 47 species
Pp3c21_11230V3.1	Pp3c21_11230	Ribosomal protein L19e family protein	0.26	OrthoFinder output from all 47 species
Pp3c22_9980V3.1	Pp3c22_9980	Ribosomal protein L19e family protein	0.08	OrthoFinder output from all 47 species
Pp3c9_14720V3.1	Pp3c9_14720	Ribosomal protein L19e family protein	0.2	OrthoFinder output from all 47 species
Ppi_g01823	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Ppi_g28399	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001949	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005282	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.17	OrthoFinder output from all 47 species
Sam_g19648	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g25834	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.18	OrthoFinder output from all 47 species
Sam_g38378	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.17	OrthoFinder output from all 47 species
Smo179747	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.15	OrthoFinder output from all 47 species
Smo271656	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.2	OrthoFinder output from all 47 species
Solyc06g009210.4.1	emb2386, Solyc06g009210	component RPL19 of LSU proteome component	0.19	OrthoFinder output from all 47 species
Solyc09g075430.3.1	Solyc09g075430	component RPL19 of LSU proteome component	0.13	OrthoFinder output from all 47 species
Spa_g11535	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.22	OrthoFinder output from all 47 species
Spa_g11536	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.26	OrthoFinder output from all 47 species
Tin_g03158	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.26	OrthoFinder output from all 47 species
Zm00001e013683_P001	emb2386, Zm00001e013683	component RPL19 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Zm00001e020524_P001	emb2386, Zm00001e020524	component RPL19 of LSU proteome component	0.21	OrthoFinder output from all 47 species
Zm00001e025202_P001	Zm00001e025202	component RPL19 of LSU proteome component	0.43	OrthoFinder output from all 47 species
Zm00001e036280_P001	Zm00001e036280	component RPL19 of LSU proteome component	0.25	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005996	monosaccharide metabolic process	None	Extended
BP	GO:0006006	glucose metabolic process	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006090	pyruvate metabolic process	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0006094	gluconeogenesis	RCA	Interproscan
BP	GO:0006096	glycolytic process	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006165	nucleoside diphosphate phosphorylation	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006757	ATP generation from ADP	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009132	nucleoside diphosphate metabolic process	None	Extended
BP	GO:0009135	purine nucleoside diphosphate metabolic process	None	Extended
BP	GO:0009141	nucleoside triphosphate metabolic process	None	Extended
BP	GO:0009144	purine nucleoside triphosphate metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	None	Extended
BP	GO:0009185	ribonucleoside diphosphate metabolic process	None	Extended
BP	GO:0009199	ribonucleoside triphosphate metabolic process	None	Extended
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	RCA	Interproscan
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	NAS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0016052	carbohydrate catabolic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
BP	GO:0019318	hexose metabolic process	None	Extended
BP	GO:0019319	hexose biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
CC	GO:0022625	cytosolic large ribosomal subunit	IDA	Interproscan
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0030054	cell junction	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042254	ribosome biogenesis	ISS	Interproscan
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046031	ADP metabolic process	None	Extended
BP	GO:0046034	ATP metabolic process	None	Extended
BP	GO:0046364	monosaccharide biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046686	response to cadmium ion	RCA	Interproscan
BP	GO:0046939	nucleotide phosphorylation	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000196	Ribosomal_L19/L19e	4	146

External Links

No external refs found!

AT1G02780 (emb2386)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation