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  5. AT1G01100

AT1G01100


Description : 60S acidic ribosomal protein family


Gene families : OG0000349 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000349_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G01100

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00113490 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
AMTR_s00100p00050800 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
Adi_g041465 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Adi_g041466 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Adi_g107171 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Adi_g123329 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g125449 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g128258 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aev_g00130 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ala_g09775 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Ala_g09776 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ala_g32202 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Ala_g38055 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Als_g04075 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Als_g13340 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Als_g25252 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g63396 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Als_g64094 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aob_g26225 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g10155 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Aop_g22529 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Aop_g31541 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g41365 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g46228 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.21 OrthoFinder output from all 47 species
Aop_g71102 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aspi01Gene20688.t1 Aspi01Gene20688 component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Azfi_s0001.g000668 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Azfi_s0068.g036426 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Cba_g28590 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g54064 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cba_g55559 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cba_g76398 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g79064 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ceric.01G125200.1 Ceric.01G125200 component *(RPP1) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Ceric.21G004600.1 Ceric.21G004600 component *(RPP1) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000342.4 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Cre17.g738300 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.27 OrthoFinder output from all 47 species
Dac_g08982 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Dac_g30739 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Dcu_g11086 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Dcu_g11087 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Dcu_g23416 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Dcu_g34913 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dde_g06728 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Dde_g43913 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ehy_g19032 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ehy_g19763 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ehy_g29663 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
GSVIVT01019679001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 OrthoFinder output from all 47 species
GSVIVT01027436001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
GSVIVT01038637001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.39 OrthoFinder output from all 47 species
Gb_21696 No alias component RPP1 of LSU proteome component 0.23 OrthoFinder output from all 47 species
LOC_Os08g02340.1 LOC_Os08g02340 component RPP1 of LSU proteome component 0.29 OrthoFinder output from all 47 species
Len_g00084 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Len_g01989 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Lfl_g24779 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g26215 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
MA_10430200g0010 No alias component RPP1 of LSU proteome component 0.08 OrthoFinder output from all 47 species
MA_90134g0010 No alias component RPP1 of LSU proteome component 0.14 OrthoFinder output from all 47 species
Mp3g02890.1 No alias component RPP1 of LSU proteome component 0.08 OrthoFinder output from all 47 species
Mp6g11950.1 No alias component RPP1 of LSU proteome component 0.15 OrthoFinder output from all 47 species
Msp_g29772 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Nbi_g13085 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Nbi_g25001 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Nbi_g27328 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pir_g04407 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Pnu_g32500 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c1_36220V3.1 Pp3c1_36220 60S acidic ribosomal protein family 0.15 OrthoFinder output from all 47 species
Pp3c20_2800V3.1 Pp3c20_2800 60S acidic ribosomal protein family 0.17 OrthoFinder output from all 47 species
Pp3c23_18100V3.1 Pp3c23_18100 60S acidic ribosomal protein family 0.15 OrthoFinder output from all 47 species
Pp3c8_22380V3.1 Pp3c8_22380 60S acidic ribosomal protein family 0.15 OrthoFinder output from all 47 species
Ppi_g07968 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ppi_g27554 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g27988 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g36444 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g44660 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g45546 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g006001 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007086 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g03056 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g05395 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g10738 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Sam_g20755 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g26274 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g32024 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g41052 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Sam_g41870 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g43338 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g44435 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g44445 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g48126 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g48161 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Smo133023 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
Solyc01g006160.3.1 Solyc01g006160 component RPP1 of LSU proteome component 0.12 OrthoFinder output from all 47 species
Solyc01g016470.3.1 Solyc01g016470 component RPP1 of LSU proteome component 0.21 OrthoFinder output from all 47 species
Solyc01g104370.4.1 Solyc01g104370 component RPP1 of LSU proteome component 0.15 OrthoFinder output from all 47 species
Spa_g03569 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.18 OrthoFinder output from all 47 species
Spa_g07269 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Spa_g28442 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Spa_g30536 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Spa_g37176 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Spa_g42994 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Spa_g45204 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Tin_g00286 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Tin_g02285 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Tin_g37350 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Zm00001e021844_P001 Zm00001e021844 component RPP1 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Zm00001e029197_P001 Zm00001e029197 component RPP1 of LSU proteome component 0.27 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0005840 ribosome ISS Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0006414 translational elongation ISS Interproscan
BP GO:0009664 plant-type cell wall organization RCA Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
BP GO:0042545 cell wall modification RCA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005618 cell wall IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005773 vacuole IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
CC GO:0005834 heterotrimeric G-protein complex IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0009739 response to gibberellin IEP HCCA
BP GO:0010476 gibberellin mediated signaling pathway IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0022625 cytosolic large ribosomal subunit IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
CC GO:0030054 cell junction IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032870 cellular response to hormone stimulus IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0071215 cellular response to abscisic acid stimulus IEP HCCA
BP GO:0071310 cellular response to organic substance IEP HCCA
BP GO:0071396 cellular response to lipid IEP HCCA
BP GO:0071495 cellular response to endogenous stimulus IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0097306 cellular response to alcohol IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901701 cellular response to oxygen-containing compound IEP HCCA
CC GO:1905360 GTPase complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!