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  5. Pnu_g27564

Pnu_g27564 (HCF173)


Aliases : HCF173

Description : protein involved in PS-II assembly *(HCF173) & original description: none


Gene families : OG0006399 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006399_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g27564

Target Alias Description ECC score Gene Family Method Actions
Adi_g026392 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
Aev_g02401 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
Ala_g08503 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.06 OrthoFinder output from all 47 species
Als_g18490 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
Aob_g05244 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.04 OrthoFinder output from all 47 species
Aop_g05654 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
Cba_g03951 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.05 OrthoFinder output from all 47 species
Cre13.g578650 HCF173 Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder output from all 47 species
Dac_g00930 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.05 OrthoFinder output from all 47 species
Dcu_g01607 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
Dde_g21297 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g25310 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
LOC_Os02g04510.1 HCF173, LOC_Os02g04510 HCF173 protein involved in PS-II assembly 0.02 OrthoFinder output from all 47 species
LOC_Os06g49120.1 HCF173, LOC_Os06g49120 HCF173 protein involved in PS-II assembly 0.03 OrthoFinder output from all 47 species
Len_g03320 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
MA_21385g0010 HCF173 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp3g04800.1 HCF173 HCF173 protein involved in PS-II assembly 0.05 OrthoFinder output from all 47 species
Nbi_g01268 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
Ore_g17922 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
Pir_g20180 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
Smo183274 HCF173 Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder output from all 47 species
Solyc08g016080.3.1 HCF173, Solyc08g016080 HCF173 protein involved in PS-II assembly 0.02 OrthoFinder output from all 47 species
Tin_g01089 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e013206_P002 HCF173, Zm00001e013206 HCF173 protein involved in PS-II assembly 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR013857 NADH-UbQ_OxRdtase-assoc_prot30 301 397
IPR016040 NAD(P)-bd_dom 154 242
IPR016040 NAD(P)-bd_dom 460 543
No external refs found!