Gb_36199


Description : Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana (sp|q9sv96|pp358_arath : 511.0)


Gene families : OG_01_0000306 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000306_tree ,
OG_02_0007143 (LandPlants) Phylogenetic Tree(s): OG_02_0007143_tree ,
OG_03_0009674 (SeedPlants) Phylogenetic Tree(s): OG_03_0009674_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_36199
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00203740 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39620,... 0.03 Archaeplastida
AT3G06430 EMB2750 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT4G39620 EMB2453, ATPPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.12 Archaeplastida
GSVIVT01017677001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.06 Archaeplastida
GSVIVT01022204001 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.06 Archaeplastida
GSVIVT01028689001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.03 Archaeplastida
LOC_Os02g51480.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.02 Archaeplastida
LOC_Os03g02430.1 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.05 Archaeplastida
LOC_Os04g39970.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os06g07550.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.03 Archaeplastida
MA_10432680g0020 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.02 Archaeplastida
MA_12518g0010 No alias Pentatricopeptide repeat-containing protein PPR5... 0.02 Archaeplastida
Mp1g15120.1 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.04 Archaeplastida
Pp3c20_15110V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
Pp3c4_14490V3.1 No alias plastid transcriptionally active 2 0.03 Archaeplastida
Pp3c8_13830V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
Pp3c8_4580V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
Solyc01g006500.4.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.05 Archaeplastida
Solyc01g057200.4.1 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.02 Archaeplastida
Solyc04g054270.4.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.07 Archaeplastida
Solyc12g098990.2.1 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.05 Archaeplastida
Zm00001e010524_P001 No alias THA8 plastidial RNA splicing factor 0.02 Archaeplastida
Zm00001e023883_P001 No alias Pentatricopeptide repeat-containing protein PPR5,... 0.07 Archaeplastida
Zm00001e031052_P001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.05 Archaeplastida
Zm00001e032726_P001 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.03 Archaeplastida
AMTR_s00007p00203740 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39620,... 0.02 LandPlants
AT4G39620 EMB2453, ATPPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.1 LandPlants
GSVIVT01022204001 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.05 LandPlants
LOC_Os02g51480.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.03 LandPlants
MA_12518g0010 No alias Pentatricopeptide repeat-containing protein PPR5... 0.04 LandPlants
Pp3c8_4580V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 LandPlants
Solyc04g054270.4.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.07 LandPlants
Zm00001e023883_P001 No alias Pentatricopeptide repeat-containing protein PPR5,... 0.05 LandPlants
AMTR_s00007p00203740 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39620,... 0.02 SeedPlants
AT4G39620 EMB2453, ATPPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.1 SeedPlants
GSVIVT01022204001 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.05 SeedPlants
LOC_Os02g51480.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.02 SeedPlants
MA_12518g0010 No alias Pentatricopeptide repeat-containing protein PPR5... 0.02 SeedPlants
Solyc04g054270.4.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.06 SeedPlants
Zm00001e023883_P001 No alias Pentatricopeptide repeat-containing protein PPR5,... 0.04 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 417 466
IPR002885 Pentatricopeptide_repeat 242 302
IPR033443 PPR_long 304 409
IPR002885 Pentatricopeptide_repeat 147 176
IPR002885 Pentatricopeptide_repeat 178 231
No external refs found!