Gb_33197

Description : subunit 1 of Pol II RNA polymerase

Gene families : OG_01_0000599 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000599_tree ,
OG_02_0005403 (LandPlants) Phylogenetic Tree(s): OG_02_0005403_tree ,
OG_03_0005891 (SeedPlants) Phylogenetic Tree(s): OG_03_0005891_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_33197
Cluster	HCCA: Cluster_143

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00152770	evm_27.TU.AmTr_v1...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.13	Archaeplastida
AT4G35800	RNA_POL_II_LSRNA_...	RNA polymerase II large subunit	0.1	Archaeplastida
Cpa\|evm.model.tig00000241.15	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.04	Archaeplastida
Cpa\|evm.model.tig00022075.5	No alias	DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana	0.06	Archaeplastida
Cpa\|evm.model.tig00022075.6	No alias	DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana	0.06	Archaeplastida
Cre03.g165750	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	Archaeplastida
GSVIVT01008740001	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.08	Archaeplastida
GSVIVT01013491001	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	Archaeplastida
GSVIVT01019869001	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.05	Archaeplastida
LOC_Os02g05880.1	No alias	subunit 1 of Pol V RNA polymerase	0.03	Archaeplastida
LOC_Os04g41490.1	No alias	subunit 1 of Pol III RNA polymerase	0.04	Archaeplastida
LOC_Os05g05860.1	No alias	subunit 1 of Pol II RNA polymerase	0.01	Archaeplastida
MA_10436091g0010	No alias	DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis...	0.1	Archaeplastida
MA_8544g0010	No alias	subunit 1 of Pol II RNA polymerase	0.09	Archaeplastida
Mp3g15530.1	No alias	subunit 1 of Pol IV RNA polymerase. subunit 1 of Pol V...	0.02	Archaeplastida
Mp4g14340.1	No alias	subunit 1 of Pol II RNA polymerase	0.04	Archaeplastida
Pp3c15_5270V3.1	No alias	nuclear RNA polymerase D1B	0.05	Archaeplastida
Pp3c17_4860V3.1	No alias	nuclear RNA polymerase C1	0.04	Archaeplastida
Pp3c1_32300V3.1	No alias	RNA polymerase II large subunit	0.09	Archaeplastida
Smo110201	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.07	Archaeplastida
Solyc01g096390.4.1	No alias	subunit 1 of Pol V RNA polymerase	0.05	Archaeplastida
Solyc08g080220.3.1	No alias	subunit 1 of Pol IV RNA polymerase	0.02	Archaeplastida
Zm00001e040236_P001	No alias	subunit 1 of Pol II RNA polymerase	0.02	Archaeplastida
AMTR_s00001p00152770	evm_27.TU.AmTr_v1...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.13	LandPlants
AT4G35800	RNA_POL_II_LSRNA_...	RNA polymerase II large subunit	0.09	LandPlants
GSVIVT01008740001	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.07	LandPlants
MA_8544g0010	No alias	subunit 1 of Pol II RNA polymerase	0.07	LandPlants
Mp4g14340.1	No alias	subunit 1 of Pol II RNA polymerase	0.03	LandPlants
Pp3c1_32300V3.1	No alias	RNA polymerase II large subunit	0.08	LandPlants
Smo110201	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.06	LandPlants
Zm00001e040236_P001	No alias	subunit 1 of Pol II RNA polymerase	0.02	LandPlants
AMTR_s00001p00152770	evm_27.TU.AmTr_v1...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.12	SeedPlants
AT4G35800	RNA_POL_II_LSRNA_...	RNA polymerase II large subunit	0.09	SeedPlants
GSVIVT01008740001	No alias	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.07	SeedPlants
MA_8544g0010	No alias	subunit 1 of Pol II RNA polymerase	0.06	SeedPlants
Zm00001e040236_P001	No alias	subunit 1 of Pol II RNA polymerase	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006366	transcription by RNA polymerase II	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007075	RNA_pol_Rpb1_6	426	610
IPR007081	RNA_pol_Rpb1_5	360	950
IPR000722	RNA_pol_asu	1	55
IPR007073	RNA_pol_Rpb1_7	695	829
IPR000684	RNA_pol_II_repeat_euk	1080	1093
IPR000684	RNA_pol_II_repeat_euk	1206	1219
IPR000684	RNA_pol_II_repeat_euk	1164	1177
IPR000684	RNA_pol_II_repeat_euk	1136	1149
IPR000684	RNA_pol_II_repeat_euk	1171	1184
IPR000684	RNA_pol_II_repeat_euk	1262	1275
IPR000684	RNA_pol_II_repeat_euk	1178	1191
IPR000684	RNA_pol_II_repeat_euk	1094	1107
IPR000684	RNA_pol_II_repeat_euk	1220	1233
IPR000684	RNA_pol_II_repeat_euk	1282	1295
IPR000684	RNA_pol_II_repeat_euk	1150	1163
IPR000684	RNA_pol_II_repeat_euk	1192	1205
IPR000684	RNA_pol_II_repeat_euk	1122	1135
IPR000684	RNA_pol_II_repeat_euk	1129	1142
IPR000684	RNA_pol_II_repeat_euk	1101	1114
IPR000684	RNA_pol_II_repeat_euk	1234	1247
IPR000684	RNA_pol_II_repeat_euk	1108	1121
IPR000684	RNA_pol_II_repeat_euk	1143	1156
IPR000684	RNA_pol_II_repeat_euk	1157	1170
IPR000684	RNA_pol_II_repeat_euk	1087	1100
IPR000684	RNA_pol_II_repeat_euk	1310	1323
IPR000684	RNA_pol_II_repeat_euk	1115	1128
IPR007083	RNA_pol_Rpb1_4	249	353
IPR007066	RNA_pol_Rpb1_3	59	222

External Links

No external refs found!

Gb_33197

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation