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Pnu_g23960


Description : DNA bending architectural protein *(HMG-B) & original description: none


Gene families : OG0000754 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000754_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g23960

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00177580 evm_27.TU.AmTr_v1... High mobility group B protein 9 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_18463 No alias High mobility group B protein 15 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_48961g0010 No alias High mobility group B protein 9 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g06147 No alias DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Nbi_g40091 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Pir_g09599 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Solyc01g100620.3.1 Solyc01g100620 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Tin_g02034 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 415 481
IPR001606 ARID_dom 181 265
No external refs found!