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  5. Pnu_g22352

Pnu_g22352


Description : not classified & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g22352
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00267050 AGL6,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AMTR_s00002p00262760 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00025p00244880 AGL61, DIA,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AT1G77950 AGL67 AGAMOUS-like 67 0.02 OrthoFinder output from all 47 species
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.02 OrthoFinder output from all 47 species
AT4G11880 AGL14 AGAMOUS-like 14 0.02 OrthoFinder output from all 47 species
AT5G60910 AGL8, FUL AGAMOUS-like 8 0.02 OrthoFinder output from all 47 species
Ala_g38807 AGL91 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68054 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene13944.t1 AGL18, Aspi01Gene13944 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene15810.t1 STK, AGL11,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s2186.g109823 No alias not classified & original description: CDS=5-496 0.02 OrthoFinder output from all 47 species
Cba_g04967 AGL21 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g23820 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g47174 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.08G048300.1 AGL42, Ceric.08G048300 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.08G048600.1 AGL10, CAL1,... not classified & original description: pacid=50638045... 0.03 OrthoFinder output from all 47 species
Ceric.34G033600.1 AGL16, Ceric.34G033600 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dde_g51026 AGL42 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15929 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01015643001 No alias No description available 0.01 OrthoFinder output from all 47 species
GSVIVT01018450001 AGL6 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01019883001 GL19, AGL19 RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
LOC_Os01g10504.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os02g07430.1 AGL32, TT16,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os02g45770.1 AGL6, LOC_Os02g45770 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os05g11380.1 STK, AGL11,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os06g11330.1 SVP, AGL22,... transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
LOC_Os06g22760.1 AGL61, DIA,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os10g39130.1 GL19, AGL19,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Len_g48343 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g52703 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g08300 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10256834g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_6544g0010 STK, AGL11 Floral homeotic protein AGAMOUS OS=Panax ginseng... 0.04 OrthoFinder output from all 47 species
MA_9972589g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Msp_g21617 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g31320 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g11366 AGL3, SEP4 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g48804 AGL8, FUL regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.02 OrthoFinder output from all 47 species
Pnu_g25142 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25344 AGL30 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g093960.3.1 AGL6, Solyc01g093960 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Solyc02g091550.2.1 AGL21, Solyc02g091550 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Solyc03g006830.3.1 AGL42, Solyc03g006830 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Solyc05g012020.4.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Solyc06g069430.3.1 AGL8, FUL, Solyc06g069430 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Solyc07g055920.4.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Solyc12g056460.3.1 SOC1, AGL20,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Spa_g14680 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g22852 AGL65 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26308 AGL15 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e030373_P001 AGL10, CAL1,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e034629_P001 AGL9, SEP3,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e039774_P001 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
CC GO:0070939 Dsl1/NZR complex IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!