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  5. Pnu_g20102

Pnu_g20102 (SHM7)


Aliases : SHM7

Description : EC_2.1 transferase transferring one-carbon group & original description: none


Gene families : OG0000518 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000518_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g20102
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00050p00206090 AtSHMT3, SHM3,... Serine hydroxymethyltransferase 3, chloroplastic... 0.03 OrthoFinder output from all 47 species
Adi_g011646 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Aev_g23906 SHM7 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Ala_g06665 SHM7 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Als_g08738 AtSHMT3, SHM3 EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Als_g30588 AtSHMT3, SHM3 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Azfi_s0018.g014726 STM, SHM1, SHMT1 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Cba_g04023 SHM7 EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Cre09.g411900 AtSHMT3, SHM3 Photosynthesis.photorespiration.serine hydroxymethyltransferase 0.02 OrthoFinder output from all 47 species
Ppi_g57264 SHM7 EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0051259 protein complex oligomerization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR039429 SHMT-like_dom 284 686
No external refs found!