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  5. Pnu_g18527

Pnu_g18527 (PAB2, PABP2, ATPAB2)


Aliases : PAB2, PABP2, ATPAB2

Description : mRNA poly-A-tail binding factor *(PABP) & original description: none


Gene families : OG0000326 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000326_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g18527
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Ceric.37G012300.1 PAB2, PABP2,... mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001264.28 PAB8, PABP8 Protein biosynthesis.translation initiation.mRNA... 0.02 OrthoFinder output from all 47 species
Cre01.g039300 PAB8, PABP8 Protein biosynthesis.translation initiation.mRNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01033724001 PAB7 Protein biosynthesis.translation initiation.mRNA... 0.04 OrthoFinder output from all 47 species
Sam_g10629 No alias mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002004 PABP_HYD 704 768
IPR000504 RRM_dom 358 426
IPR000504 RRM_dom 461 529
IPR000504 RRM_dom 179 249
IPR000504 RRM_dom 267 334
No external refs found!