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  5. Pnu_g16813

Pnu_g16813


Description : mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP trafficking complex & original description: none


Gene families : OG0000667 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000667_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g16813
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00035940 evm_27.TU.AmTr_v1... RNA processing.messenger ribonucleoprotein particle... 0.05 OrthoFinder output from all 47 species
AT5G02530 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Aev_g17794 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.03 OrthoFinder output from all 47 species
Als_g15022 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.02 OrthoFinder output from all 47 species
Aob_g01620 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.02 OrthoFinder output from all 47 species
Aob_g04122 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.04 OrthoFinder output from all 47 species
Azfi_s0107.g045108 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000194.40 No alias RNA processing.messenger ribonucleoprotein particle... 0.01 OrthoFinder output from all 47 species
Dac_g07847 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.03 OrthoFinder output from all 47 species
Dac_g29514 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.03 OrthoFinder output from all 47 species
GSVIVT01025009001 No alias RNA processing.messenger ribonucleoprotein particle... 0.03 OrthoFinder output from all 47 species
LOC_Os06g14470.1 ALY4, LOC_Os06g14470 mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.02 OrthoFinder output from all 47 species
LOC_Os08g33120.1 ALY4, LOC_Os08g33120 mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 OrthoFinder output from all 47 species
Lfl_g02048 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.04 OrthoFinder output from all 47 species
Smo402061 GCN3, ATGCN3 RNA processing.messenger ribonucleoprotein particle... 0.02 OrthoFinder output from all 47 species
Solyc04g014460.4.1 ALY4, Solyc04g014460 mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.02 OrthoFinder output from all 47 species
Solyc10g086400.2.1 Solyc10g086400 mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.04 OrthoFinder output from all 47 species
Solyc11g073280.2.1 Solyc11g073280 mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.06 OrthoFinder output from all 47 species
Spa_g32971 No alias mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
InterPro domains Description Start Stop
IPR025715 FoP_C 257 304
IPR000504 RRM_dom 163 231
No external refs found!