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  5. Als_g63300

Als_g63300 (APUM12, PUM12)


Aliases : APUM12, PUM12

Description : not classified & original description: none


Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g63300

Target Alias Description ECC score Gene Family Method Actions
Aop_g07672 APUM12, PUM12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene23705.t1 APUM12, PUM12,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene37289.t1 APUM12, PUM12,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g14977 APUM8, PUM8 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020878.26 PUM7, APUM7 Pumilio homolog 12 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Len_g13938 PUM7, APUM7 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g48047 APUM12, PUM12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05711 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55660 PUM7, APUM7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e024450_P001 APUM12, PUM12,... Pumilio homolog 12 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0010257 NADH dehydrogenase complex assembly IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0032981 mitochondrial respiratory chain complex I assembly IEP HCCA
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 433 454
IPR001313 Pumilio_RNA-bd_rpt 565 598
IPR001313 Pumilio_RNA-bd_rpt 641 671
IPR001313 Pumilio_RNA-bd_rpt 677 707
IPR001313 Pumilio_RNA-bd_rpt 828 846
IPR001313 Pumilio_RNA-bd_rpt 712 745
IPR001313 Pumilio_RNA-bd_rpt 750 768
IPR001313 Pumilio_RNA-bd_rpt 601 634
IPR001313 Pumilio_RNA-bd_rpt 787 818
No external refs found!