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  5. Als_g60927

Als_g60927


Description : not classified & original description: none


Gene families : OG0001049 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001049_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g60927

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00031290 evm_27.TU.AmTr_v1... F-box protein At2g27310 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00114p00120290 evm_27.TU.AmTr_v1... Probable F-box protein At2g36090 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT2G27310 No alias F-box family protein 0.03 OrthoFinder output from all 47 species
AT2G36090 No alias F-box family protein 0.02 OrthoFinder output from all 47 species
Ala_g01481 No alias substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... 0.01 OrthoFinder output from all 47 species
Aob_g04265 SLY1 substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene24799.t1 Aspi01Gene24799 substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... 0.04 OrthoFinder output from all 47 species
Ceric.05G080600.1 Ceric.05G080600 substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... 0.08 OrthoFinder output from all 47 species
GSVIVT01011119001 No alias Probable F-box protein At2g36090 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_08961 SLY1 SLY-type gibberellin signal transducer. component F-box... 0.04 OrthoFinder output from all 47 species
Gb_08963 SLY1 SLY-type gibberellin signal transducer. component F-box... 0.03 OrthoFinder output from all 47 species
Gb_11568 SLY1 SLY-type gibberellin signal transducer. component F-box... 0.02 OrthoFinder output from all 47 species
Gb_29906 SLY1 SLY-type gibberellin signal transducer. component F-box... 0.02 OrthoFinder output from all 47 species
LOC_Os04g33820.1 LOC_Os04g33820 Probable F-box protein At2g36090 OS=Arabidopsis thaliana... 0.08 OrthoFinder output from all 47 species
Len_g10650 No alias substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... 0.02 OrthoFinder output from all 47 species
MA_119267g0010 SLY1 SLY-type gibberellin signal transducer. component F-box... 0.04 OrthoFinder output from all 47 species
MA_164016g0010 SLY1 SLY-type gibberellin signal transducer. component F-box... 0.33 OrthoFinder output from all 47 species
MA_196364g0010 SLY1 SLY-type gibberellin signal transducer. component F-box... 0.05 OrthoFinder output from all 47 species
MA_235884g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_3236g0010 SLY2 SLY-type gibberellin signal transducer. component F-box... 0.02 OrthoFinder output from all 47 species
MA_9868304g0010 SLY1 no hits & (original description: none) 0.2 OrthoFinder output from all 47 species
Ore_g18489 No alias substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... 0.02 OrthoFinder output from all 47 species
Ore_g26122 SLY1 substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... 0.02 OrthoFinder output from all 47 species
Ore_g28804 SLY1 substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... 0.04 OrthoFinder output from all 47 species
Ore_g32241 No alias substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... 0.02 OrthoFinder output from all 47 species
Pir_g33760 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g17370 SLY1 substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... 0.01 OrthoFinder output from all 47 species
Solyc11g068710.3.1 Solyc11g068710 Probable F-box protein At2g36090 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Spa_g15092 No alias substrate adaptor of SCF E3 ubiquitin ligase *(SLY) &... 0.03 OrthoFinder output from all 47 species
Tin_g03889 No alias substrate adaptor of SCF E3 ubiquiTin ligase *(SLY) &... 0.02 OrthoFinder output from all 47 species
Zm00001e009127_P001 Zm00001e009127 Probable F-box protein At2g36090 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Zm00001e014737_P001 Zm00001e014737 Probable F-box protein At2g36090 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e040837_P001 Zm00001e040837 Probable F-box protein At2g36090 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!