Als_g55158


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g55158

Target Alias Description ECC score Gene Family Method Actions
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g026204 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22769 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g34224 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07757 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g20245 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g66997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67905 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g76750 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08824 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g08934 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g31335 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g49324 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g04775 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06676 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g11358 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g22117 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g38648 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g25357 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02831 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02916 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g13499 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g53095 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57530 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005807 No alias not classified & original description: CDS=1-2844 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009769 No alias not classified & original description: CDS=1-1794 0.04 OrthoFinder output from all 47 species
Solyc09g090440.1.1 LPA66, Solyc09g090440 Pentatricopeptide repeat-containing protein At5g66520... 0.03 OrthoFinder output from all 47 species
Spa_g12101 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000966 RNA 5'-end processing IEP HCCA
BP GO:0001682 tRNA 5'-leader removal IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
CC GO:0030677 ribonuclease P complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0099116 tRNA 5'-end processing IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1902555 endoribonuclease complex IEP HCCA
CC GO:1905348 endonuclease complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 76 123
IPR002885 Pentatricopeptide_repeat 150 173
No external refs found!