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  5. Als_g54939

Als_g54939 (VAC1, ECB2, ATECB2)


Aliases : VAC1, ECB2, ATECB2

Description : not classified & original description: none


Gene families : OG0013231 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0013231_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g54939
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
Ala_g12590 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G079800.1 Ceric.06G079800 not classified & original description: pacid=50620633... 0.05 OrthoFinder output from all 47 species
Dac_g23862 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17574 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g13916 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07444 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g48631 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07072 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 16 39
IPR002885 Pentatricopeptide_repeat 118 140
IPR002885 Pentatricopeptide_repeat 431 454
IPR002885 Pentatricopeptide_repeat 329 353
IPR002885 Pentatricopeptide_repeat 219 241
IPR002885 Pentatricopeptide_repeat 144 191
IPR002885 Pentatricopeptide_repeat 41 88
IPR002885 Pentatricopeptide_repeat 247 291
IPR002885 Pentatricopeptide_repeat 356 401
No external refs found!