Als_g54316

Description : component *(SRm160) of RNA quality control Exon Junction complex & original description: none

Gene families : OG0003504 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003504_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Als_g54316

Target	Alias	Description	ECC score	Gene Family Method
Adi_g019655	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g02107	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Aop_g11891	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Aspi01Gene61525.t1	Aspi01Gene61525	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Dac_g07102	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g46327	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
Gb_33063	No alias	component SRm160 of RNA quality control Exon Junction complex	0.03	OrthoFinder output from all 47 species
Len_g50994	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species
Nbi_g09941	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.03	OrthoFinder output from all 47 species
Tin_g23972	No alias	component *(SRm160) of RNA quality control Exon Junction...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
MF	GO:0017056	structural constituent of nuclear pore	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002483	PWI_dom	46	114

External Links

No external refs found!