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  5. Als_g54254

Als_g54254


Description : component *(bL28c) of large plastid ribosomal-subunit proteome & original description: none


Gene families : OG0006464 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006464_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g54254

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00174670 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
AT2G33450 No alias Ribosomal L28 family 0.05 OrthoFinder output from all 47 species
Adi_g107767 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aev_g02708 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ala_g05691 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Aob_g09499 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aop_g69998 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aspi01Gene02149.t1 Aspi01Gene02149 component *(bL28c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Azfi_s0087.g042281 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ceric.06G041500.1 Ceric.06G041500 component *(bL28c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Cre06.g265800 No alias Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
Dac_g00398 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Dcu_g05058 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Dde_g27683 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ehy_g00252 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
GSVIVT01027870001 No alias Protein biosynthesis.organelle translation... 0.07 OrthoFinder output from all 47 species
Gb_39628 No alias component psRPL28 of large ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
LOC_Os05g01110.1 LOC_Os05g01110 component psRPL28 of large ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Len_g11369 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
MA_10426581g0010 No alias component psRPL28 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Mp4g05120.1 No alias component psRPL28 of large ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
Ore_g11040 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ore_g11041 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Pnu_g09843 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Pp3c5_28500V3.1 Pp3c5_28500 Ribosomal L28 family 0.05 OrthoFinder output from all 47 species
Sam_g23667 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Solyc09g090410.3.1 Solyc09g090410 component psRPL28 of large ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
Tin_g00322 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Zm00001e004728_P001 Zm00001e004728 component psRPL28 of large ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
Zm00001e012787_P001 Zm00001e012787 component psRPL28 of large ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
MF GO:0010242 oxygen evolving activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
BP GO:0042549 photosystem II stabilization IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR026569 Ribo_L28/L24 78 137
No external refs found!