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  5. Als_g52362

Als_g52362


Description : uridine 5-carboxymethylaminomethyl modification enzyme *(TrmE) & original description: none


Gene families : OG0006066 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006066_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g52362

Target Alias Description ECC score Gene Family Method Actions
AT1G78010 No alias tRNA modification GTPase, putative 0.04 OrthoFinder output from all 47 species
Adi_g101298 No alias uridine 5-carboxymethylaminomethyl modification enzyme... 0.04 OrthoFinder output from all 47 species
Aspi01Gene13988.t1 Aspi01Gene13988 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0078.g038163 No alias uridine 5-carboxymethylaminomethyl modification enzyme... 0.05 OrthoFinder output from all 47 species
Cba_g51488 No alias uridine 5-carboxymethylaminomethyl modification enzyme... 0.03 OrthoFinder output from all 47 species
GSVIVT01008990001 No alias No description available 0.04 OrthoFinder output from all 47 species
Len_g00666 No alias uridine 5-carboxymethylaminomethyl modification enzyme... 0.03 OrthoFinder output from all 47 species
MA_10428042g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g26361 No alias uridine 5-carboxymethylaminomethyl modification enzyme... 0.03 OrthoFinder output from all 47 species
Sam_g50485 No alias uridine 5-carboxymethylaminomethyl modification enzyme... 0.03 OrthoFinder output from all 47 species
Zm00001e022362_P004 Zm00001e022362 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005244 voltage-gated monoatomic ion channel activity IEP HCCA
MF GO:0005247 voltage-gated chloride channel activity IEP HCCA
MF GO:0005253 monoatomic anion channel activity IEP HCCA
MF GO:0005254 chloride channel activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0006821 chloride transport IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
MF GO:0008308 voltage-gated monoatomic anion channel activity IEP HCCA
MF GO:0008509 monoatomic anion transmembrane transporter activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015108 chloride transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022832 voltage-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR018948 GTP-bd_TrmE_N 96 224
IPR006073 GTP-bd 321 443
IPR025867 MnmE_helical 227 563
No external refs found!