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  5. Als_g49981

Als_g49981


Description : not classified & original description: none


Gene families : OG0000596 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000596_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g49981

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00074p00175650 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g62910... 0.04 OrthoFinder output from all 47 species
AT1G63630 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Aev_g48359 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01036253001 No alias Pentatricopeptide repeat-containing protein At1g12620... 0.05 OrthoFinder output from all 47 species
MA_33956g0010 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.03 OrthoFinder output from all 47 species
MA_7256709g0010 No alias Pentatricopeptide repeat-containing protein At1g05670,... 0.04 OrthoFinder output from all 47 species
Ore_g25561 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo100394 No alias Pentatricopeptide repeat-containing protein At1g09900... 0.03 OrthoFinder output from all 47 species
Smo103638 No alias Pentatricopeptide repeat-containing protein At3g22470,... 0.02 OrthoFinder output from all 47 species
Smo99426 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 8 56
IPR002885 Pentatricopeptide_repeat 79 127
IPR002885 Pentatricopeptide_repeat 144 175
No external refs found!