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  5. Als_g47147

Als_g47147 (AGL42)


Aliases : AGL42

Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g47147

Target Alias Description ECC score Gene Family Method Actions
AT3G61120 AGL13 AGAMOUS-like 13 0.04 OrthoFinder output from all 47 species
AT4G37940 AGL21 AGAMOUS-like 21 0.03 OrthoFinder output from all 47 species
Als_g28471 SHP2, AGL5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g59584 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g26897 AGL16 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene48068.t2 AGL30, Aspi01Gene48068 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07320 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g17331 AGL9, SEP3 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g25122 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29967 AGL16 MADS/AGL-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.12G051800.1 GL19, AGL19,... MADS/AGL-type transcription factor & original... 0.06 OrthoFinder output from all 47 species
Dcu_g32867 AGL13 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50123 AGL3, SEP4 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Msp_g20675 AGL16 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g38153 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g24287 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g02052 AGL61, DIA MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g15427 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g19814 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g29613 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g33044 AGL42 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g57086 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15354 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo437868 AGL29 RNA biosynthesis.transcriptional activation.MADS box... 0.07 OrthoFinder output from all 47 species
Solyc05g015730.1.1 FLC, AGL25, FLF,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Tin_g20318 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g28194 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0042162 telomeric DNA binding IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
MF GO:0043047 single-stranded telomeric DNA binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0098847 sequence-specific single stranded DNA binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002487 TF_Kbox 151 236
IPR002100 TF_MADSbox 75 122
No external refs found!