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  5. Als_g38421

Als_g38421 (ATSYP52, SYP52)


Aliases : ATSYP52, SYP52

Description : Qc-type SYP5-group component of SNARE membrane fusion complex & original description: none


Gene families : OG0001545 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001545_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g38421
Cluster HCCA: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
AT1G16240 ATSYP51, SYP51 syntaxin of plants 51 0.02 OrthoFinder output from all 47 species
Adi_g052524 ATSYP52, SYP52 Qc-type SYP5-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Cre17.g709350 ATSYP51, SYP51 Vesicle trafficking.SNARE target membrane recognition... 0.01 OrthoFinder output from all 47 species
Ehy_g02128 ATSYP52, SYP52 Qc-type SYP5-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
LOC_Os02g02720.3 ATSYP52, SYP52,... SYP5 group Qc-type SNARE protein 0.03 OrthoFinder output from all 47 species
Len_g02678 ATSYP52, SYP52 Qc-type SYP5-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Mp3g14430.1 ATSYP52, SYP52 SYP5 group Qc-type SNARE protein 0.02 OrthoFinder output from all 47 species
Ore_g30768 ATSYP52, SYP52 Qc-type SYP5-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0030.g010389 ATSYP52, SYP52 Qc-type SYP5-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Smo441012 ATSYP51, SYP51 Vesicle trafficking.SNARE target membrane recognition... 0.02 OrthoFinder output from all 47 species
Zm00001e006817_P002 ATSYP52, SYP52,... SYP5 group Qc-type SNARE protein 0.04 OrthoFinder output from all 47 species
Zm00001e022242_P001 ATSYP52, SYP52,... SYP5 group Qc-type SNARE protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006022 aminoglycan metabolic process IEP HCCA
BP GO:0006026 aminoglycan catabolic process IEP HCCA
BP GO:0006030 chitin metabolic process IEP HCCA
BP GO:0006032 chitin catabolic process IEP HCCA
BP GO:0006040 amino sugar metabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046348 amino sugar catabolic process IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901071 glucosamine-containing compound metabolic process IEP HCCA
BP GO:1901072 glucosamine-containing compound catabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000727 T_SNARE_dom 172 218
No external refs found!