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  5. Als_g37509

Als_g37509


Description : deadenylase component *(CAF1) of mRNA deadenylation CCR4-NOT complex & original description: none


Gene families : OG0000833 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000833_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g37509
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00182000 evm_27.TU.AmTr_v1... Probable CCR4-associated factor 1 homolog 7... 0.03 OrthoFinder output from all 47 species
Adi_g020714 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Adi_g077584 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Aev_g07025 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000857.19 No alias Probable CCR4-associated factor 1 homolog 7... 0.01 OrthoFinder output from all 47 species
Dde_g02762 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Ehy_g00624 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03366 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
LOC_Os09g24990.2 LOC_Os09g24990 Probable CCR4-associated factor 1 homolog 7... 0.02 OrthoFinder output from all 47 species
Len_g11620 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g20084 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Lfl_g22790 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Nbi_g01805 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Ore_g26043 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Pir_g01526 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Sam_g08624 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo84624 No alias Probable CCR4-associated factor 1 homolog 7... 0.01 OrthoFinder output from all 47 species
Solyc01g007840.3.1 Solyc01g007840 deadenylase component CAF1 of CCR4-NOT complex 0.01 OrthoFinder output from all 47 species
Spa_g06339 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Tin_g04415 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR006941 RNase_CAF1 15 137
No external refs found!