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  5. Pnu_g13765

Pnu_g13765


Description : not classified & original description: none


Gene families : OG0000898 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000898_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g13765

Target Alias Description ECC score Gene Family Method Actions
Adi_g003782 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g014978 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058470 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g19277 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g11372 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g28141 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g02714 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g04837 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g21938 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os09g07360.1 LOC_Os09g07360 FRIGIDA-like protein 3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Lfl_g17270 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10430352g0020 No alias FRIGIDA-like protein 4b OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_10436820g0010 No alias FRIGIDA-like protein 3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ore_g00670 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g04962 FRL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19044 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25145 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g33978 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03087 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g12674 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g39887 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e033632_P002 Zm00001e033632 FRIGIDA-like protein 3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e035443_P001 Zm00001e035443 FRIGIDA-like protein 3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR012474 Frigida 186 478
No external refs found!