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  5. Als_g33867

Als_g33867


Description : pre-60S ribosomal subunit assembly factor *(NOP4) & original description: none


Gene families : OG0005318 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005318_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g33867

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00226160 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AT2G21440 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.06 OrthoFinder output from all 47 species
Adi_g050354 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.04 OrthoFinder output from all 47 species
Aob_g14659 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.04 OrthoFinder output from all 47 species
Aop_g68936 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.08 OrthoFinder output from all 47 species
Azfi_s1017.g095259 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.03 OrthoFinder output from all 47 species
Ceric.10G020200.1 Ceric.10G020200 pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000144.75 No alias No description available 0.03 OrthoFinder output from all 47 species
Cre02.g104650 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g16260 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.02 OrthoFinder output from all 47 species
Ehy_g03991 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.05 OrthoFinder output from all 47 species
GSVIVT01024222001 No alias No description available 0.04 OrthoFinder output from all 47 species
Gb_24677 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.03 OrthoFinder output from all 47 species
LOC_Os03g58720.1 LOC_Os03g58720 pre-60S ribosomal subunit assembly factor (NOP4) 0.02 OrthoFinder output from all 47 species
LOC_Os03g60930.1 LOC_Os03g60930 pre-60S ribosomal subunit assembly factor (NOP4) 0.03 OrthoFinder output from all 47 species
Mp7g13580.1 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.03 OrthoFinder output from all 47 species
Msp_g13408 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.02 OrthoFinder output from all 47 species
Nbi_g43889 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.04 OrthoFinder output from all 47 species
Pir_g18515 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.02 OrthoFinder output from all 47 species
Sam_g36528 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.05 OrthoFinder output from all 47 species
Solyc01g109990.4.1 Solyc01g109990 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Spa_g08758 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.03 OrthoFinder output from all 47 species
Tin_g27533 No alias pre-60S ribosomal subunit assembly factor *(NOP4) &... 0.04 OrthoFinder output from all 47 species
Zm00001e011846_P001 Zm00001e011846 pre-60S ribosomal subunit assembly factor (NOP4) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003972 RNA ligase (ATP) activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008452 RNA ligase activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 416 484
IPR000504 RRM_dom 30 99
IPR000504 RRM_dom 625 693
IPR000504 RRM_dom 783 853
No external refs found!