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  5. Als_g33558

Als_g33558


Description : ER tubulae formation factor *(RHD3/RL) & original description: none


Gene families : OG0001619 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001619_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g33558

Target Alias Description ECC score Gene Family Method Actions
Adi_g021765 RHD3 ER tubulae formation factor *(RHD3/RL) & original... 0.03 OrthoFinder output from all 47 species
Aob_g02219 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.05 OrthoFinder output from all 47 species
Cba_g12043 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000140.10 No alias Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dcu_g51662 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.02 OrthoFinder output from all 47 species
Dde_g08635 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01016855001 No alias Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Gb_39091 No alias ER tubulae formation factor (RHD3/RL) 0.02 OrthoFinder output from all 47 species
Gb_41499 No alias ER tubulae formation factor (RHD3/RL) 0.03 OrthoFinder output from all 47 species
Pir_g01679 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.03 OrthoFinder output from all 47 species
Solyc03g121590.3.1 RHD3, Solyc03g121590 ER tubulae formation factor (RHD3/RL) 0.04 OrthoFinder output from all 47 species
Zm00001e020502_P002 RHD3, Zm00001e020502 ER tubulae formation factor (RHD3/RL) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR046758 Sey1/RHD3-like_3HB 322 767
No external refs found!