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  5. Als_g33054

Als_g33054 (ATDRH1, DRH1)


Aliases : ATDRH1, DRH1

Description : not classified & original description: none


Gene families : OG0000636 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000636_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g33054

Target Alias Description ECC score Gene Family Method Actions
AT3G06480 No alias DEAD box RNA helicase family protein 0.03 OrthoFinder output from all 47 species
Adi_g020035 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g020036 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14759 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09685 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.03 OrthoFinder output from all 47 species
Aspi01Gene18403.t1 ATDRH1, DRH1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0022.g016084 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.03 OrthoFinder output from all 47 species
Cba_g09901 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.04 OrthoFinder output from all 47 species
Cba_g10365 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.27G030300.1 ATDRH1, DRH1,... not classified & original description: pacid=50605657... 0.07 OrthoFinder output from all 47 species
Dcu_g10540 ATDRH1, DRH1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g17995 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g20062 ATDRH1, DRH1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01007665001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
GSVIVT01017651001 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os01g36860.1 ATDRH1, DRH1,... DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
LOC_Os01g68320.2 LOC_Os01g68320 pre-mRNA splicing regulator (DDX5) 0.02 OrthoFinder output from all 47 species
LOC_Os11g46240.1 ATDRH1, DRH1,... DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g14109 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17375 ATDRH1, DRH1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g51090 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.02 OrthoFinder output from all 47 species
Lfl_g05034 ATDRH1, DRH1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g09160 ATDRH1, DRH1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g02786 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08678 ATDRH1, DRH1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g19068 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.05 OrthoFinder output from all 47 species
Pnu_g10603 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.03 OrthoFinder output from all 47 species
Pnu_g12189 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g14840 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17193 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0077.g017597 ATDRH1, DRH1 not classified & original description: CDS=159-3038 0.03 OrthoFinder output from all 47 species
Sam_g29066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g057760.4.1 Solyc01g057760 DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Solyc03g112350.4.1 Solyc03g112350 pre-mRNA splicing regulator (DDX5) 0.05 OrthoFinder output from all 47 species
Zm00001e005014_P001 Zm00001e005014 DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Zm00001e011376_P001 Zm00001e011376 ATP-dependent RNA helicase-like protein DB10... 0.03 OrthoFinder output from all 47 species
Zm00001e016546_P001 Zm00001e016546 pre-mRNA splicing regulator (DDX5) 0.03 OrthoFinder output from all 47 species
Zm00001e020727_P006 ATDRH1, DRH1,... DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Zm00001e020972_P005 ATDRH1, DRH1,... DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e027719_P003 ATDRH1, DRH1,... DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001202 WW_dom 19 49
IPR001650 Helicase_C 586 694
IPR011545 DEAD/DEAH_box_helicase_dom 379 549
No external refs found!