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  5. Als_g32607

Als_g32607 (UPF1, ATUPF1, LBA1)


Aliases : UPF1, ATUPF1, LBA1

Description : not classified & original description: none


Gene families : OG0001598 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g32607

Target Alias Description ECC score Gene Family Method Actions
Cre09.g396139 UPF1, ATUPF1, LBA1 Regulator of nonsense transcripts 1 homolog... 0.01 OrthoFinder output from all 47 species
Lfl_g04285 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Sam_g25380 No alias Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.02 OrthoFinder output from all 47 species
Sam_g25381 No alias Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004730 pseudouridylate synthase activity IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
InterPro domains Description Start Stop
IPR041679 DNA2/NAM7-like_C 575 775
IPR041677 DNA2/NAM7_AAA_11 347 567
No external refs found!