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Description : subgroup ERF-VI transcription factor & original description: none
Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Pnu_g13205 | |
| Cluster | HCCA: Cluster_42 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00010p00095120 | ERF110,... | Ethylene-responsive transcription factor ERF110... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00099p00039760 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.AP2/ERF... | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g009324 | ATERF12, ERF12 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g079001 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g22458 | HRE2 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g30583 | LEP | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g42816 | ERF-1, ATERF-1 | subgroup ERF-IX transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g23893 | RAP2.2 | transcription factor component *(HRE/RAP2.12) of... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g22960 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g17593 | CRF3 | subgroup ERF-VI transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g11677 | No alias | subgroup ERF-V transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01037712001 | ATERF3, ERF3 | RNA biosynthesis.transcriptional activation.AP2/ERF... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os05g27930.1 | DREB2A, DREB2,... | transcription factor (DREB) | 0.03 | OrthoFinder output from all 47 species | |
| Len_g20241 | RAP2.2 | transcription factor component *(HRE/RAP2.12) of... | 0.02 | OrthoFinder output from all 47 species | |
| Mp1g20040.1 | ATERF4, RAP2.5,... | transcription factor (ERF) | 0.01 | OrthoFinder output from all 47 species | |
| Ore_g06505 | RAP2.12 | transcription factor component *(HRE/RAP2.12) of... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g28144 | DDF1 | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Pnu_g14872 | RAP2.2 | transcription factor component *(HRE/RAP2.12) of... | 0.01 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0214.g025993 | ERF72, EBP, ATEBP, RAP2.3 | transcription factor component *(HRE/RAP2.12) of... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc12g049560.2.1 | RAP2.2, Solyc12g049560 | transcription factor (ERF) | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g06007 | CRF3 | subgroup ERF-VI transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g22183 | CRF4 | subgroup ERF-VI transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g26845 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005525 | GTP binding | IEP | HCCA |
| CC | GO:0005667 | transcription regulator complex | IEP | HCCA |
| CC | GO:0005672 | transcription factor TFIIA complex | IEP | HCCA |
| BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
| BP | GO:0006367 | transcription initiation at RNA polymerase II promoter | IEP | HCCA |
| MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
| MF | GO:0016787 | hydrolase activity | IEP | HCCA |
| BP | GO:0017006 | protein-tetrapyrrole linkage | IEP | HCCA |
| BP | GO:0017007 | protein-bilin linkage | IEP | HCCA |
| BP | GO:0017009 | protein-phycocyanobilin linkage | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
| MF | GO:0051540 | metal cluster binding | IEP | HCCA |
| CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |