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  5. Als_g28448

Als_g28448


Description : RNA helicase *(RCF1) & original description: none


Gene families : OG0003781 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003781_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g28448
Cluster HCCA: Cluster_250

Target Alias Description ECC score Gene Family Method Actions
Ala_g15868 No alias RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20189 No alias RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05329 No alias RNA helicase *(RCF1) & original description: none 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000204.43 No alias RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
Ehy_g09244 No alias RNA helicase *(RCF1) & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os08g06344.2 LOC_Os08g06344 RNA helicase (Prp5) 0.05 OrthoFinder output from all 47 species
Len_g49748 No alias RNA helicase *(RCF1) & original description: none 0.04 OrthoFinder output from all 47 species
Mp1g06750.1 No alias RNA helicase (Prp5) 0.03 OrthoFinder output from all 47 species
Ore_g10272 No alias RNA helicase *(RCF1) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g52675 No alias RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc12g098700.1.1 Solyc12g098700 RNA helicase (Prp5) 0.02 OrthoFinder output from all 47 species
Zm00001e040204_P001 Zm00001e040204 RNA helicase (Prp5) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 583 754
IPR001650 Helicase_C 792 900
IPR006594 LisH 8 32
No external refs found!